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Report for CCDS56900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56900.1 Public Mus musculus 13 Ccl28 23 108 98 CCDS HistoryNCBI Gene:56838Re-query CCDS DB by CCDS ID:56900.1Re-query CCDS DB by GeneID:56838See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099241.3 ENSMUSP00000096847.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099241.3Link to Ensembl Protein Viewer:ENSMUSP00000096847.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099241Re-query CCDS DB by Protein ID:ENSMUSP00000096847
Original member Current member NCBI NM_020279.3 NP_064675.1 Accepted alive Link to Nucleotide Sequence:NM_020279.3Link to Protein Sequence:NP_064675.1Re-query CCDS DB by Nucleotide ID:NM_020279Re-query CCDS DB by Protein ID:NP_064675Link to BLAST:NP_064675.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064675.1 130 Q9JIL2 130 100% 0 0

Chromosomal Locations for CCDS 56900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 119623873 119623936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119645869 119645995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 119650865 119651066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGCAGCAAGCAGGGCTCACACTCATGGCTGTGGCTGTGTGTGTGGCTTTTCAAACCTCAGAAGCCATAC
TTCCCATGGCCTCCAGCTGTTGCACTGAGGTGTCTCATCATGTTTCCGGAAGACTTCTGGAAAGAGTGAG
TTCATGCAGCATCCAGAGAGCTGACGGGGACTGCGACCTGGCTGCTGTCATCCTTCATGTTAAACGTAGA
AGAATCTGCATCAGCCCGCACAATCGTACTTTGAAGCAGTGGATGAGAGCCTCAGAGGTAAAGAAGAATG
GCAGAGAAAACGTATGTTCTGGGAAAAAACAACCCAGCAGGAAGGACAGAAAAGGGCACACTACGAGAAA
GCACAGAACACGTGGAACACACAGGCACGAAGCCTCTCGTTAG

Translation (130 aa):
MQQAGLTLMAVAVCVAFQTSEAILPMASSCCTEVSHHVSGRLLERVSSCSIQRADGDCDLAAVILHVKRR
RICISPHNRTLKQWMRASEVKKNGRENVCSGKKQPSRKDRKGHTTRKHRTRGTHRHEASR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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