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Report for CCDS9048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9048.1 Public Homo sapiens 12 CRADD 24 110 108 CCDS HistoryNCBI Gene:8738Re-query CCDS DB by CCDS ID:9048.1Re-query CCDS DB by GeneID:8738See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332896.8 ENSP00000327647.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332896.8Link to Ensembl Protein Viewer:ENSP00000327647.3Re-query CCDS DB by Nucleotide ID:ENST00000332896Re-query CCDS DB by Protein ID:ENSP00000327647
Original member Current member EBI ENST00000542893.2 ENSP00000439068.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542893.2Link to Ensembl Protein Viewer:ENSP00000439068.2Re-query CCDS DB by Nucleotide ID:ENST00000542893Re-query CCDS DB by Protein ID:ENSP00000439068
Original member Current member NCBI NM_001320099.2 NP_001307028.1 Accepted alive Link to Nucleotide Sequence:NM_001320099.2Link to Protein Sequence:NP_001307028.1Re-query CCDS DB by Nucleotide ID:NM_001320099Re-query CCDS DB by Protein ID:NP_001307028Link to BLAST:NP_001307028.1
Original member Current member NCBI NM_003805.5 NP_003796.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003805.5Link to Protein Sequence:NP_003796.1Re-query CCDS DB by Nucleotide ID:NM_003805Re-query CCDS DB by Protein ID:NP_003796Link to BLAST:NP_003796.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307028.1 199 P78560-1 199 100% 0 0
NP_003796.1 199 P78560-1 199 100% 0 0

Chromosomal Locations for CCDS 9048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 93678775 93679072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 93849970 93850271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (600 nt):
ATGGAGGCCAGAGACAAACAAGTACTCCGCTCACTTCGCCTGGAGCTGGGTGCAGAGGTATTGGTGGAGG
GACTGGTTCTTCAGTACCTCTACCAGGAAGGAATCTTGACGGAAAACCATATTCAAGAAATCAATGCTCA
AACCACAGGCCTCCGGAAAACAATGCTCCTGCTGGATATCCTACCTTCCAGGGGCCCTAAAGCATTTGAT
ACATTCCTAGATTCCCTACAGGAGTTTCCCTGGGTCAGGGAGAAGCTGAAGAAGGCAAGGGAAGAGGCCA
TGACCGACCTGCCTGCAGGTGACAGATTGACTGGGATCCCCTCGCACATCCTCAACAGCTCCCCATCAGA
CCGGCAGATTAACCAGCTGGCCCAGAGGCTGGGCCCTGAGTGGGAGCCCATGGTGCTGTCTCTGGGACTG
TCCCAGACGGATATCTACCGCTGTAAGGCCAACCACCCCCACAACGTGCAGTCGCAGGTGGTGGAGGCCT
TCATCCGTTGGCGGCAGCGCTTCGGGAAGCAGGCCACCTTCCAGAGCCTGCACAACGGGCTGCGGGCTGT
GGAGGTGGACCCCTCGCTGCTCCTGCACATGTTGGAGTGA

Translation (199 aa):
MEARDKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQTTGLRKTMLLLDILPSRGPKAFD
TFLDSLQEFPWVREKLKKAREEAMTDLPAGDRLTGIPSHILNSSPSDRQINQLAQRLGPEWEPMVLSLGL
SQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQATFQSLHNGLRAVEVDPSLLLHMLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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