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Report for CCDS35782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35782.1 Public Mus musculus 1 Atp1a2 23 108 98 CCDS HistoryNCBI Gene:98660Re-query CCDS DB by CCDS ID:35782.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085913.10 ENSMUSP00000083077.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085913.10Link to Ensembl Protein Viewer:ENSMUSP00000083077.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085913Re-query CCDS DB by Protein ID:ENSMUSP00000083077
Original member Current member NCBI NM_178405.3 NP_848492.1 Accepted alive Link to Nucleotide Sequence:NM_178405.3Link to Protein Sequence:NP_848492.1Re-query CCDS DB by Nucleotide ID:NM_178405Re-query CCDS DB by Protein ID:NP_848492Link to BLAST:NP_848492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848492.1 1020 Q6PIE5 1020 100% 0 0

Chromosomal Locations for CCDS 35782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172274701 172274729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172275918 172276009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172276121 172276222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172278257 172278387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172278535 172278680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172278871 172278994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172279313 172279467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172279668 172279836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172279936 172280086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172280569 172280705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172284500 172284675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172284769 172284958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172285654 172285788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172285964 172286073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172286198 172286396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172287200 172287468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172289301 172289418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172290253 172290387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172290611 172290724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172291193 172291396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172293327 172293386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172293572 172293676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172297881 172297892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3063 nt):
ATGGGTCGTGGGGCAGGGCGTGAGTACTCGCCTGCTGCCACCACTGCGGAAAATGGGGGTGGCAAGAAGA
AACAGAAAGAGAAGGAGCTCGATGAGCTGAAGAAGGAGGTTGCCATGGATGACCACAAGCTGTCCTTGGA
TGAGCTGGGCCGAAAATACCAAGTGGATCTGTCTAAGGGCCTCACCAATCAGCGAGCTCAGGACATTCTG
GCTAGAGATGGACCCAACGCCCTTACTCCGCCCCCCACAACTCCTGAGTGGGTCAAGTTCTGTCGTCAGC
TTTTTGGGGGCTTCTCTATCCTGCTGTGGATTGGGGCACTCCTCTGCTTCTTAGCCTATGGTATCCTGGC
CGCTATGGAGGACGAACCATCCAACGATAATTTATATCTAGGTATCGTGCTAGCGGCTGTAGTTATCGTC
ACCGGCTGCTTCTCCTACTACCAGGAAGCCAAGAGCTCCAAGATCATGGACTCCTTCAAGAACATGGTGC
CTCAGCAAGCTCTGGTCATCCGAGAGGGAGAAAAGATGCAGATCAATGCAGAGGAGGTGGTGGTGGGAGA
CCTGGTGGAGGTGAAGGGTGGAGACCGTGTCCCTGCTGACCTCCGGATCATCTCTTCCCACGGTTGCAAG
GTGGATAACTCATCCCTAACAGGGGAGTCGGAGCCCCAGACCCGTTCTCCTGAGTTCACCCACGAGAACC
CCTTGGAGACGCGCAATATCTGTTTCTTCTCTACCAACTGCGTGGAAGGCACTGCCAGGGGCATTGTGAT
TGCCACAGGTGACCGGACAGTGATGGGCCGCATAGCCACTCTTGCCTCTGGCCTAGAGGTGGGACAGACA
CCCATAGCCATGGAGATCGAGCATTTCATCCAGCTGATCACAGGGGTGGCTGTGTTCCTGGGGGTCTCCT
TCTTCGTTCTGTCCCTCATCCTGGGCTACAGCTGGCTGGAGGCAGTCATCTTCCTCATCGGCATCATCGT
AGCCAATGTGCCCGAAGGGCTGTTGGCCACCGTGACTGTGTGCCTGACGCTGACAGCCAAGCGCATGGCT
CGCAAAAACTGCCTGGTGAAGAACCTGGAGGCCGTGGAGACGCTGGGCTCCACGTCCACCATCTGCTCAG
ACAAGACGGGCACCCTCACCCAGAACCGCATGACAGTGGCTCACATGTGGTTTGACAACCAGATCCATGA
GGCTGACACCACAGAGGACCAGTCTGGGGCCACTTTTGACAAACGGTCCCCCACATGGACAGCCCTGTCT
CGGATCGCTGGTCTCTGCAATCGTGCTGTCTTCAAGGCTGGACAAGAGAACATCTCCGTGTCTAAGCGGG
ACACAGCTGGAGATGCTTCTGAGTCAGCTCTGCTCAAGTGCATTGAGCTGTCCTGTGGCTCAGTGAGGAA
GATGAGGGACAGGAACCCTAAGGTGGCAGAAATCCCCTTCAACTCCACCAACAAATATCAGCTCTCCATC
CACGAGAGGGAAGACAGTCCCCAGAGCCATGTGCTGGTGATGAAAGGCGCCCCAGAGCGCATCCTGGACC
GATGCTCCACCATCCTGGTACAGGGCAAGGAGATCCCTCTTGACAAGGAGATGCAAGATGCTTTTCAAAA
CGCCTACATGGAGCTGGGAGGACTTGGGGAACGAGTGCTGGGCTTCTGTCAGCTGAACCTGCCTTCTGGA
AAGTTTCCTCGGGGCTTCAAATTTGATACAGATGAGCTGAACTTTCCCACAGAGAAGCTCTGTTTTGTGG
GGCTCATGTCTATGATTGATCCCCCCAGAGCAGCCGTGCCGGATGCCGTGGGCAAGTGCCGAAGCGCGGG
CATCAAGGTGATCATGGTGACCGGGGATCACCCCATCACAGCTAAGGCCATTGCCAAAGGTGTGGGCATC
ATATCAGAGGGTAACGAGACTGTGGAAGACATTGCAGCCAGGCTCAACATTCCTGTGAGTCAAGTCAATC
CCAGAGAAGCCAAGGCGTGTGTAGTGCACGGCTCAGACCTGAAGGACATGACGTCAGAGCAGCTGGATGA
GATCCTCAGGGACCACACGGAGATTGTCTTTGCCCGGACCTCCCCTCAGCAGAAGCTTATCATTGTGGAA
GGGTGTCAGAGGCAGGGAGCCATTGTGGCAGTGACTGGTGACGGGGTGAACGACTCCCCCGCGCTGAAGA
AGGCTGACATTGGCATTGCCATGGGCATCTCCGGCTCCGATGTCTCTAAGCAGGCGGCTGACATGATCCT
TCTCGACGACAACTTTGCCTCCATTGTGACAGGCGTGGAGGAGGGCCGCCTGATCTTTGACAACTTGAAG
AAGTCCATCGCATACACCCTGACCAGCAACATCCCTGAGATCACCCCCTTCCTGCTGTTCATCATTGCCA
ACATCCCCCTTCCACTGGGCACTGTGACCATCCTCTGCATCGACCTGGGGACAGATATGGTTCCTGCTAT
CTCATTAGCATACGAAGCAGCTGAGAGTGACATCATGAAGAGGCAGCCACGAAACTCCCAGACAGACAAG
CTGGTGAACGAGAGGCTTATCAGCATGGCTTACGGACAGATTGGCATGATCCAGGCTCTGGGTGGCTTCT
TTACCTACTTTGTGATACTGGCAGAGAATGGGTTTCTACCATCGCGGCTGCTAGGGATCCGCCTGGACTG
GGATGATCGGACTACCAACGACCTGGAGGACAGCTATGGACAAGAGTGGACCTACGAGCAGCGGAAGGTG
GTGGAGTTCACATGCCACACGGCCTTCTTCGCTAGCATCGTGGTTGTGCAGTGGGCTGACCTCATCATCT
GCAAGACCCGTCGCAACTCAGTGTTCCAGCAGGGCATGAAGAACAAGATCCTGATTTTTGGGCTGCTAGA
AGAGACGGCTTTGGCTGCCTTTCTGTCTTACTGCCCGGGCATGGGGGTTGCCCTCCGGATGTACCCACTC
AAGGTCACGTGGTGGTTCTGTGCCTTCCCCTACAGTCTCCTCATCTTCATCTATGATGAAGTTCGGAAGC
TCATCCTACGGCGGTACCCTGGGGGCTGGGTGGAGAAGGAGACGTACTACTGA

Translation (1020 aa):
MGRGAGREYSPAATTAENGGGKKKQKEKELDELKKEVAMDDHKLSLDELGRKYQVDLSKGLTNQRAQDIL
ARDGPNALTPPPTTPEWVKFCRQLFGGFSILLWIGALLCFLAYGILAAMEDEPSNDNLYLGIVLAAVVIV
TGCFSYYQEAKSSKIMDSFKNMVPQQALVIREGEKMQINAEEVVVGDLVEVKGGDRVPADLRIISSHGCK
VDNSSLTGESEPQTRSPEFTHENPLETRNICFFSTNCVEGTARGIVIATGDRTVMGRIATLASGLEVGQT
PIAMEIEHFIQLITGVAVFLGVSFFVLSLILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMA
RKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEDQSGATFDKRSPTWTALS
RIAGLCNRAVFKAGQENISVSKRDTAGDASESALLKCIELSCGSVRKMRDRNPKVAEIPFNSTNKYQLSI
HEREDSPQSHVLVMKGAPERILDRCSTILVQGKEIPLDKEMQDAFQNAYMELGGLGERVLGFCQLNLPSG
KFPRGFKFDTDELNFPTEKLCFVGLMSMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGI
ISEGNETVEDIAARLNIPVSQVNPREAKACVVHGSDLKDMTSEQLDEILRDHTEIVFARTSPQQKLIIVE
GCQRQGAIVAVTGDGVNDSPALKKADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLK
KSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDK
LVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPSRLLGIRLDWDDRTTNDLEDSYGQEWTYEQRKV
VEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLLEETALAAFLSYCPGMGVALRMYPL
KVTWWFCAFPYSLLIFIYDEVRKLILRRYPGGWVEKETYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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