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Report for CCDS39190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39190.1 Public Mus musculus 5 Dspp 23 108 98 CCDS HistoryNCBI Gene:666279Re-query CCDS DB by CCDS ID:39190.1Re-query CCDS DB by GeneID:666279See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112771.1 ENSMUSP00000108391.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112771.1Link to Ensembl Protein Viewer:ENSMUSP00000108391.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112771Re-query CCDS DB by Protein ID:ENSMUSP00000108391
Original member Current member NCBI NM_010080.3 NP_034210.2 Accepted alive Link to Nucleotide Sequence:NM_010080.3Link to Protein Sequence:NP_034210.2Re-query CCDS DB by Nucleotide ID:NM_010080Re-query CCDS DB by Protein ID:NP_034210Link to BLAST:NP_034210.2

Chromosomal Locations for CCDS 39190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104174027 104174083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104174896 104174982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104175137 104176078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104176859 104178610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2838 nt):
ATGAAAATGAAGATAATTATATATATATGCATTTGGGCAACTGCCTGGGCCATTCCGGTTCCCCAGTTAG
TACCACTGGAAAGAGACATTGTTGAAAACTCTGTGGCTGTGCCTCTTCTAACACATCCAGGAACTGCAGC
ACAGAATGAGTTATCTATCAACAGCACCACTAGCAACAGCAACGACTCCCCAGATGGCAGTGAGATAGGA
GAGCAGGTACTTAGCGAGGATGGTTACAAAAGAGATGGGAATGGCTCCGAGTCAATACATGTAGGAGGGA
AGGATTTTCCTACTCAGCCCATTTTAGTAAACGAACAGGGGAACACTGCTGAAGAACACAATGACATAGA
AACATACGGTCATGATGGGGTACATGCGAGAGGAGAGAACAGCACAGCAAATGGCATCAGGAGCCAGGTA
GGCATCGTTGAAAATGCGGAGGAAGCAGAGAGCAGTGTCCACGGACAGGCTGGTCAGAATACAAAATCTG
GAGGTGCTAGTGATGTAAGCCAGAATGGAGATGCGACCCTTGTCCAGGAAAATGAGCCTCCAGAAGCTAG
CATCAAGAATAGCACCAACCATGAGGCTGGAATACACGGGAGTGGGGTTGCTACACATGAAACGACGCCT
CAGAGAGAAGGGCTGGGGAGTGAGAACCAGGGGACTGAGGTGACACCAAGCATCGGGGAAGATGCAGGTT
TGGATGATACTGATGGGAGTCCTAGCGGGAACGGGGTAGAGGAGGATGAAGATACAGGCTCTGGTGATGG
TGAGGGTGCAGAAGCAGGAGATGGAAGGGAGAGCCATGATGGCACTAAGGGCCAGGGGGGCCAATCTCAT
GGGGGAAACACTGACCACAGAGGTCAGAGTTCAGTTAGTACTGAAGATGATGATTCTAAAGAACAAGAAG
GCTTCCCAAATGGACACAATGGAGACAACAGCAGTGAGGAAAACGGTGTTGAAGAAGGCGACAGTACCCA
GGCAACGCAGGACAACCAAAAGCTCAGCCCCAAAGACACCCGAGATGCAGAGGGTGGGATCATCAGCCAG
TCAGAAGCATGTCCTTCTGGGAAGAGCCAAGATCAGGGAATAGAAACTGAAGGTCCCAACAAAGGCAACA
AAAGTATTATTACCAAAGAATCTGGGAAACTCAGTGGAAGTAAAGATAGCAATGGACACCAAGGAGTGGA
GCTGGACAAAAGGAATAGCCCAAAGCAAGGGGAGTCTGACAAGCCTCAAGGCACTGCTGAGAAATCAGCT
GCCCACAGTAACCTGGGACACAGCAGGATAGGTAGCAGCAGCAATAGTGATGGGCATGACAGTTACGAGT
TCGATGACGAGTCCATGCAAGGAGATGATCCCAAGAGCAGCGACGAATCTAACGGAAGTGACGAAAGTGA
CACTAACTCTGAAAGCGCCAATGAGAGTGGCAGCCGTGGAGATGCTTCTTACACATCTGATGAATCAAGT
GATGATGACAATGACAGTGACTCACATGCGGGAGAAGACGATAGCAGTGATGACTCATCTGATACAGATG
ACAGTGACAGTAATGGTGATGGTGACAGTGACAGTAATGGTGATGGTGACAGCGAGAGTGAGGACAAGGA
CGAATCTGACAGCAGTGACCATGACAACAGCAGTGACAGTGAGAGCAAATCAGACAGCAGTGACAGTAGT
GACGACAGCAGTGACAGCAGCGACAGTAGTGACAGCAGTGACAGCAGTGACAGTAGTGACAGTAGTGACA
GCAGCGACAGCAGTGACAGCAGCGACAGCAACAGTAGTAGTGACAGCAGCGACAGCAGCAGTAGTAGTGA
CAGCAGCGACAGCAGTGACAGCAGTGACAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGCAGT
GACAGCAGCGATAGCAGTGACAGCAGTGACAGTAGTGACAGCAGTGACAGCAGCGACAGCAGCAGTAGTA
GTGACAGCAGCGACAGCAGCAGTAGTAGTGACAGCAGCGACAGCAGTGACAGCAGTGACAGCAGCGATAG
CAGTGACAGCAGTGACAGCAGCAGCAGCGACAGCAGCAGCAGTAGCAACAGCAGTGACAGTAGTGACAGC
AGTGACAGCAGCAGCAGCAGCGACAGCAGCAACAGCAGCGACAGCAGTGACAGTAGTGACAGCAGTGACA
GTAGTGACAGCAGTGACAGCAGCAACAGTAGTGACAGCAGCGACAGCAGCAGTAGTAGTGACAGCAGCGA
CAGCAGCAGTAGTAGTGACAGCAGTGACAGTAGTGACAGTAGTGACAGCAGTGAGAGCAGTGAGAGCAGC
GACAGCAGCAACAGCAGTGACAGCAGCGACAGTAGTGACAGCAGTGACAGTAGCGACAGCAGCGACAGTA
GTGACAGTAGCGACAGCAGTGACAGTAGCAACAGTAGCGACAGCAGTGACAGCAGTGACAGCAGCGACAG
TAGTGACAGCAGCAACAGTAGTGACAGCAGTGACAGTAGCGACAGTAGTGACAGCAGTGACAGCAGTGAC
AGCAGCGACAGTAGTGACAGCAGTGACAGTAGTGACAGCAGCGACAGTAGTGACAGCAGTGACAGCAGTG
ACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGCGACAGCAGTGACAGCAG
CGACAGCAGCAACAGCAGTGACAGCAGTGACAGTGACAGCAAGGATAGCAGTTCTGACAGCAGTGATGGT
GACAGCAAGTCTGGTAATGGCAACAGTGACAGCAACAGTGACAGCAACAGTGACAGTGACAGTGACAGTG
AAGGCAGTGACAGTAACCACTCAACCAGTGATGATTAG

Translation (945 aa):
MKMKIIIYICIWATAWAIPVPQLVPLERDIVENSVAVPLLTHPGTAAQNELSINSTTSNSNDSPDGSEIG
EQVLSEDGYKRDGNGSESIHVGGKDFPTQPILVNEQGNTAEEHNDIETYGHDGVHARGENSTANGIRSQV
GIVENAEEAESSVHGQAGQNTKSGGASDVSQNGDATLVQENEPPEASIKNSTNHEAGIHGSGVATHETTP
QREGLGSENQGTEVTPSIGEDAGLDDTDGSPSGNGVEEDEDTGSGDGEGAEAGDGRESHDGTKGQGGQSH
GGNTDHRGQSSVSTEDDDSKEQEGFPNGHNGDNSSEENGVEEGDSTQATQDNQKLSPKDTRDAEGGIISQ
SEACPSGKSQDQGIETEGPNKGNKSIITKESGKLSGSKDSNGHQGVELDKRNSPKQGESDKPQGTAEKSA
AHSNLGHSRIGSSSNSDGHDSYEFDDESMQGDDPKSSDESNGSDESDTNSESANESGSRGDASYTSDESS
DDDNDSDSHAGEDDSSDDSSDTDDSDSNGDGDSDSNGDGDSESEDKDESDSSDHDNSSDSESKSDSSDSS
DDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNSSSDSSDSSSSSDSSDSSDSSDSSDSSDSSDSSDSS
DSSDSSDSSDSSDSSDSSDSSSSSDSSDSSSSSDSSDSSDSSDSSDSSDSSDSSSSDSSSSSNSSDSSDS
SDSSSSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSSSSDSSDSSSSSDSSDSSDSSDSSESSESS
DSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSD
SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSDSKDSSSDSSDG
DSKSGNGNSDSNSDSNSDSDSDSEGSDSNHSTSDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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