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Report for CCDS15582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15582.1 Public Mus musculus 1 Cnih4 23 108 98 CCDS HistoryNCBI Gene:98417Re-query CCDS DB by CCDS ID:15582.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15582.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134115.7 ENSMUSP00000115772.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134115.7Link to Ensembl Protein Viewer:ENSMUSP00000115772.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134115Re-query CCDS DB by Protein ID:ENSMUSP00000115772
Original member Current member NCBI NM_030131.3 NP_084407.1 Accepted alive Link to Nucleotide Sequence:NM_030131.3Link to Protein Sequence:NP_084407.1Re-query CCDS DB by Nucleotide ID:NM_030131Re-query CCDS DB by Protein ID:NP_084407Link to BLAST:NP_084407.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084407.1 139 Q9CX13 139 100% 0 0

Chromosomal Locations for CCDS 15582.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181150993 181151061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181153735 181153803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181155859 181155971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181162075 181162215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181166181 181166208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGAGGCGGTGGTGTTCCTCTTCTCGCTCCTCGACTGTTGCGCGCTCATCTTCCTCTCCGTCTACTTCA
TCATTACATTGTCTGATTTAGAATGTGATTACATTAACGCCAGATCATGTTGCTCAAAATTAAACAAGTG
GGTGATCCCGGAGTTGGTCGGCCACACCATTGTCACTGTGCTGATGCTTGTCTCCCTGCACTGGTTCATC
TTCCTTCTCAACTTACCTGTCGCCACGTGGAATATATATAGGTTCATTATGGTGCCAAGTGGCAACATGG
GAGTATTTGATCCAACAGAAATACACAACCGGGGACAGTTAAAGTCACACATGAAAGAAGCCATGATCAA
GCTTGGTTTCTACCTGCTCTGTTTCTTCATGTATCTCTATAGTATGATTCTAGCTTTGATAAATGACTGA

Translation (139 aa):
MEAVVFLFSLLDCCALIFLSVYFIITLSDLECDYINARSCCSKLNKWVIPELVGHTIVTVLMLVSLHWFI
FLLNLPVATWNIYRFIMVPSGNMGVFDPTEIHNRGQLKSHMKEAMIKLGFYLLCFFMYLYSMILALIND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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