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Report for CCDS14955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14955.1 Public Mus musculus 1 Stk17b 23 108 98 CCDS HistoryNCBI Gene:98267Re-query CCDS DB by CCDS ID:14955.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14955.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027263.13 ENSMUSP00000027263.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027263.13Link to Ensembl Protein Viewer:ENSMUSP00000027263.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027263Re-query CCDS DB by Protein ID:ENSMUSP00000027263
Original member Current member NCBI NM_133810.3 NP_598571.2 Accepted alive Link to Nucleotide Sequence:NM_133810.3Link to Protein Sequence:NP_598571.2Re-query CCDS DB by Nucleotide ID:NM_133810Re-query CCDS DB by Protein ID:NP_598571Link to BLAST:NP_598571.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598571.2 372 Q8BG48 372 100% 0 0

Chromosomal Locations for CCDS 14955.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53757488 53757770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53760982 53761161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53762589 53762637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53764032 53764158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53765921 53766065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53771610 53771822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53776517 53776638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGTCTCGGAGGAGATTCGATTGCCGAAGTGTCTCAGGCTTGCTAACTACAACCCCTCAAACGCCGATTA
AAACAGAGAATTTTAATAATTTCTATACTCTTACCCCAAAAGAACTTGGGAGAGGAAAATTTGCTGTGGT
TAGACAATGTATATCAAAATCAACTGGACAAGAGTATGCTGCCAAATCCCTGAAAAAGAGGAGAAGAGGG
CAGGATTGCCGGGCGGAAATTCTGCATGAGATAGCTGTGCTGGAGCTGGCCAGGTCTTGTCCCCACGTGA
TTAATCTGCATGAGGTCTACGAAAATGCAACGGAAATCATTTTGGTGTTAGAATATGCTGCGGGTGGAGA
AATTTTCAACCTGTGTTTACCTGAGTTAGCCGAAATGGTATCTGAAAATGATGTTATCAGACTCATTAAA
CAAATCCTTGAAGGAGTTCATTATCTACATCAGAATAACATTGTTCACCTTGATTTAAAGCCACAGAATA
TACTTTTGAGCAGTATATACCCACTCGGGGACATAAAAATTGTAGATTTTGGAATGTCTCGAAAAATTGG
GAATGCAAGTGAGCTTCGGGAAATCATGGGAACACCTGAATACTTAGCTCCAGAAATCCTCAACTATGAT
CCCATTACCACAGCAACAGATATGTGGAATATTGGCATAATAGCGTATATGTTGTTAACTCATACATCAC
CATTTGTAGGAGAAGATAATCAAGAAACATATCTGAATATTTCTCAAGTGAATGTAGATTATTCAGAAGA
AATGTTTTCATCAGTTTCACAGCTGGCCACAGACTTCATCCAGAGCCTTCTAGTAAAGAACCCAGAGAAA
AGACCAACAGCAGAATCCTGCCTATCCCACTCATGGCTGCAGCAGTGGGACTTTGGAAGCTTGTTTCATC
CTGAGGAAACTTCAGGCTCCTCTCAAATTCAGGATCTGACTCTCAGGTCCTCTGAAGAGAAGACCTCCAA
GTCCTCCTGTAATGGGAGCTGTGGAGCCCGGGAGGACAAGGAGAACATCCCTGAAGATGGCAGCTTAGTT
TCTAAAAGATTTCGATTCGATGACTCCTTGCCCAGCCCCCATGAACTTGTTCCAGATTTGTTCTGTTAG

Translation (372 aa):
MSRRRFDCRSVSGLLTTTPQTPIKTENFNNFYTLTPKELGRGKFAVVRQCISKSTGQEYAAKSLKKRRRG
QDCRAEILHEIAVLELARSCPHVINLHEVYENATEIILVLEYAAGGEIFNLCLPELAEMVSENDVIRLIK
QILEGVHYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGNASELREIMGTPEYLAPEILNYD
PITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEEMFSSVSQLATDFIQSLLVKNPEK
RPTAESCLSHSWLQQWDFGSLFHPEETSGSSQIQDLTLRSSEEKTSKSSCNGSCGAREDKENIPEDGSLV
SKRFRFDDSLPSPHELVPDLFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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