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Report for CCDS29589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29589.1 Public Mus musculus 19 Tmem132a 23 108 98 CCDS HistoryNCBI Gene:98170Re-query CCDS DB by CCDS ID:29589.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025645.13 ENSMUSP00000025645.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025645.13Link to Ensembl Protein Viewer:ENSMUSP00000025645.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025645Re-query CCDS DB by Protein ID:ENSMUSP00000025645
Original member Current member NCBI NM_133804.2 NP_598565.2 Accepted alive Link to Nucleotide Sequence:NM_133804.2Link to Protein Sequence:NP_598565.2Re-query CCDS DB by Nucleotide ID:NM_133804Re-query CCDS DB by Protein ID:NP_598565Link to BLAST:NP_598565.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598565.2 1018 Q922P8 1018 100% 0 0

Chromosomal Locations for CCDS 29589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10858108 10859151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10859564 10859755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10860124 10860397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10861530 10861732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10863223 10863366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10863465 10863660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10863955 10864104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10865256 10865587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10866469 10866687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10866930 10867144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 10869539 10869626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGACTGAACGCAAGGCTGCGGCCCCTCGGGGGCCCTACGGTGCCTGGTTCTGCCTCCTGGTGGCTCTCG
CCCTGGAAGTCGTGAGAGTTAGCAGTAACCATGATACCCTGGACCCCATCTACCTGCCAGTGGCCCTGGA
ACTCCTAGATGCCCCTGAGCATTTTCGTGTGCAGCAGGTGGGCCATTACCCACCTGCCAACTCTTCCCTG
GCCTCCCGCTCTGAGACTTTCCTGCTCATGCAGCCCTGGCCCAGGGCACAGCCGCTTCTCCGGGCCTCCT
ACCCACCCTTTGCCACTCAGCAGGTGGTCCCTCCTAGGGTCACCGAGCCCCACCGGCGGCCTGTCCCTTG
GGATGTGCGGGCTGTTTCCGTGGAAGCAGCGGTGACTCCAGCAGAACCCTATGCCCGTGTCCTCTTCCAC
CTCAAAGGGCAGGATTGGCCACCAGGACCTGGCAGCTTGCCCTGTGCCCGACTACATGCCACACACCCTG
CAGGCACTGCCCACCGAGCCTGCCGCTTCCAGCCATCTCTGGGTGCCTGTGTGGTGGAACTGCAATTCCC
CTCTCACTGGTTCTCCCAAAGTGCCACCACAAGGGCCGAACTGGCCTACACGCTGGAGCCTGCAGGCGAG
GGCCCTGGGGGCTGTGGCCTTGGCACAGAGGAGGAACCCAGGGAGCAGGCTCTCCCAGTGGGTGGTGTGG
AGCTGCACCCTGAGGACCCCCCACAGTACCAGGAGGTACCTCTGGATGAAGCAGTCACTTTGCGTGCACC
TGATGTGCCAATGAGGCCTGGCCAGCTCTTCACTGCCACCCTTCTGCTTCGACACAACTTCACTGCGAGC
CTTCTTACTCTGCGGATTAAGGTGAAGAAAGGGCTGCAGGTGATAGCTGCCCGCCCAGCCCAGCCCACCC
TCTGGACTGCTAAGTTAGACCGCTTCAAGGGCTCAAAGCACCACACCAGCCTGATCACCTGTCACCGTGC
TGGGCCTGCAGGGCCAGATTCCAGCCCCCTTGAACTGTCCGAGTTCCTGTGGGTGGACTTTGCAGTGGAG
AACAGCACTGGTGGGGGTGTGGCAGTCACTCGCCCTGTCACGTGGCAGCTGGAGTACCCAGGTCAGGCCC
CCGAAGCAGAGAAGGACAAAATGGTGTGGGAGATCCTGGTGTCTGAGCGGGACATCAGAGCCCTCATCCC
TCTGGCCAAGGCTGAGGAGCTGGTGAACACGGCTCCATTGACTGGAGTGCCCCAGCGTATTCCGGTGCGG
CTCGTCACTGTGGACAGTGGGGGAGCCTTGGAGGAGGTGACAGAGCACATTGGCTGTGAGTCAGCCAATA
CACAGGTCCTGCAGGTATCTGAGGCCTGTGATGCTGTGTTCGTGGCTGGCCAGGAGAGCCGGGGTGCCAA
GGGGGTGAGGGTGGACTTCTGGTGGCGCCGACTTCGGGCCTCACTAAAGCTGACTGTATGGGCCCCACTC
CTGCCCTTGCGCATTGAGCTGACTGACACCACTCTGGAACAAATCCGAGGCTGGAGGGTCCCAGGCTCAG
CAGAAGGGCAGCTGGAGCCTGAGACTGCTGCTGAGGAGGTGGAGCGGCGCTCCCGTGGCTGCCGCCTGCA
GTACCAGAGAGCTGGTGTGCGCTTCTTGGTGCCCTTTGCGGCTCACCCGCTGGACGGTGGCCGTCGCCTC
ACCCACCTACTCGGTCCTGACTGGTTGCTGGATGTGAGTCACCTCGTGGCAGCCCATGCCCATGTGCAAG
ATCCTCGCATAGCCTCCTTGGAAGGTGGCCGCATCCTAGTGGGACGGGAGCCTGGAGTCACCTCTATCGA
GGTTCGTTCCCCGCTGTCTGACGCCATCCTGGGGGAGCAGGCACTGGCTGTGACAGACGACAAGGTCTCA
GTGCTGGATCTGCGAGTACAGCCGGTGATGGGCATCTCACTGTCCTTGAGCCGGGGCATGTCCCACCCTG
GAGAAGTCACAGCCACATGCTGGGCCCAGTCAGCTCTTCCAGCCCCAAAGCAGGAGGTGGCCCTCTCCCT
GTGGCTGTCCTTCTCTGACCACACTTTGGCCCCAGCCGAGCTCTACGACCGCAATGACCTGGGGCTGTCG
GTCTCAGCTGAGGAGCCCAGTGCTGTTCTGCCAGCCGAAGAGCAGGGAGCCCAGCTTGGTGTGGTGGTGA
GTGGTGTGGGTGCCGAAGGGCTGCCCCTACACGTGGCTCTGCACCCACCCGAACCCTGCCGCCGGGGCCG
CCATCGCGTTCCCCTGGCATCAGGCACCGCCTGGCTGGGGTTGCCCCCTTTGCCCACACCAGTTCCTGCC
CTCCCATCCAGCCCTGTCCGGACCTCACCGTTCACAGAAGCCACGGTGGAGGGAAAGCGGCAGATAGCAG
GTGATATGGGGGGCCATGTGGGTATTAGGGGCAAGTTTGAGCGGGCAGAGGAAGAAGCTGGGAAGGAAGA
AAATGAGGCCAAAGAAGAGGAGGAAGATGAGGAAGAGATGGTGCCTGCCCCTCAGCGTGTCACCGACCTA
GAGCTGGGGATGTATGCTCTTCTGGGCATCTTCTGTTTGGCCATCCTCATCTTCCTGGTCAATGGTGTGG
TCTTTGTGTTGCGCTACCAGCGCAAAGAGCCTCCAGACAGCGCTACAGACCCTGCCTCCCCTCAGCCACA
TAACTGGGTCTGGCTGGGCACCAATCAGGAGGAACTGAGTCGGCAGCTGGACCGATGCTCTTCCTCGGGT
CCACCCAAGGGGGAGGGGGGCTGCCCTTGTGAAAGTGGGGCAGGAGGGGATGCCTCAACCGTGGCCCCCA
GTGCTTCAGAGAGCCCTGCTGGCTCCTCGAGCACCCTGGCCCGCAAAGAAGCCGGGGGACGTCGGAAGCG
AGTCGAGTTTGTGACATTTGCACCAGCACCCCCAACCCAGCCGCCTGAGGAGCCTGTAGGGGCCCCCGCT
GTACAGTCCATCCTGGTGGCAGGTGAGGAGGACATCCGCTGGGTGTGCGAGGACATGGGGCTGAAGGACC
CAGAGGAGCTTCGAAACTACATGGAGAGGATCCGGGGCAGCTCCTGA

Translation (1018 aa):
MTERKAAAPRGPYGAWFCLLVALALEVVRVSSNHDTLDPIYLPVALELLDAPEHFRVQQVGHYPPANSSL
ASRSETFLLMQPWPRAQPLLRASYPPFATQQVVPPRVTEPHRRPVPWDVRAVSVEAAVTPAEPYARVLFH
LKGQDWPPGPGSLPCARLHATHPAGTAHRACRFQPSLGACVVELQFPSHWFSQSATTRAELAYTLEPAGE
GPGGCGLGTEEEPREQALPVGGVELHPEDPPQYQEVPLDEAVTLRAPDVPMRPGQLFTATLLLRHNFTAS
LLTLRIKVKKGLQVIAARPAQPTLWTAKLDRFKGSKHHTSLITCHRAGPAGPDSSPLELSEFLWVDFAVE
NSTGGGVAVTRPVTWQLEYPGQAPEAEKDKMVWEILVSERDIRALIPLAKAEELVNTAPLTGVPQRIPVR
LVTVDSGGALEEVTEHIGCESANTQVLQVSEACDAVFVAGQESRGAKGVRVDFWWRRLRASLKLTVWAPL
LPLRIELTDTTLEQIRGWRVPGSAEGQLEPETAAEEVERRSRGCRLQYQRAGVRFLVPFAAHPLDGGRRL
THLLGPDWLLDVSHLVAAHAHVQDPRIASLEGGRILVGREPGVTSIEVRSPLSDAILGEQALAVTDDKVS
VLDLRVQPVMGISLSLSRGMSHPGEVTATCWAQSALPAPKQEVALSLWLSFSDHTLAPAELYDRNDLGLS
VSAEEPSAVLPAEEQGAQLGVVVSGVGAEGLPLHVALHPPEPCRRGRHRVPLASGTAWLGLPPLPTPVPA
LPSSPVRTSPFTEATVEGKRQIAGDMGGHVGIRGKFERAEEEAGKEENEAKEEEEDEEEMVPAPQRVTDL
ELGMYALLGIFCLAILIFLVNGVVFVLRYQRKEPPDSATDPASPQPHNWVWLGTNQEELSRQLDRCSSSG
PPKGEGGCPCESGAGGDASTVAPSASESPAGSSSTLARKEAGGRRKRVEFVTFAPAPPTQPPEEPVGAPA
VQSILVAGEEDIRWVCEDMGLKDPEELRNYMERIRGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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