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Report for CCDS30706.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30706.1 Public Homo sapiens 1 EFCAB14 24 110 108 CCDS HistoryNCBI Gene:9813Re-query CCDS DB by CCDS ID:30706.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30706.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371933.8 ENSP00000361001.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371933.8Link to Ensembl Protein Viewer:ENSP00000361001.3Re-query CCDS DB by Nucleotide ID:ENST00000371933Re-query CCDS DB by Protein ID:ENSP00000361001
Original member Current member NCBI NM_014774.3 NP_055589.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014774.3Link to Protein Sequence:NP_055589.1Re-query CCDS DB by Nucleotide ID:NM_014774Re-query CCDS DB by Protein ID:NP_055589Link to BLAST:NP_055589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055589.1 495 O75071 495 100% 0 0

Chromosomal Locations for CCDS 30706.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 46678461 46678636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46683300 46683425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46684491 46684602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46686784 46686870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46688353 46688544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46689587 46689691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46691827 46691937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46696551 46696649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46707906 46708051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46716295 46716443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 46717903 46718087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGAAAAAGCGCAAAGAGCTCAATGCATTGATTGGTTTGGCTGGGGACAGCCGGAGAAAGAAGCCCAAGA
AAGGCCCAAGCAGTCACCGCCTGCTTCGCACTGAGCCTCCCGACTCAGACTCTGAGTCCAGCTCCGAAGA
GGAAGAGGAATTCGGTGTGGTTGGAAATCGCTCTCGCTTTGCCAAGGGAGACTATTTACGATGCTGCAAG
ATCTGTTATCCGCTCTGTGGTTTTGTCATCCTTGCTGCCTGTGTTGTGGCCTGTGTTGGCTTGGTGTGGA
TGCAGGTTGCTCTCAAGGAGGATCTGGATGCCCTCAAGGAAAAATTTCGAACAATGGAATCTAATCAGAA
AAGCTCATTCCAAGAAATCCCCAAACTTAATGAAGAACTACTCAGCAAGCAAAAACAACTTGAGAAGATT
GAATCTGGAGAGATGGGTTTGAACAAAGTCTGGATAAACATCACAGAAATGAATAAGCAGATTTCTCTGT
TGACTTCTGCAGTGAACCACCTCAAAGCCAATGTTAAGTCAGCTGCAGACTTGATTAGCCTGCCTACCAC
TGTAGAGGGACTTCAGAAGAGTGTAGCTTCCATTGGCAATACTTTAAACAGCGTCCATCTTGCTGTGGAA
GCACTACAGAAAACTGTGGATGAACACAAGAAAACGATGGAATTACTGCAGAGTGATATGAATCAGCACT
TCTTGAAGGAGACTCCTGGAAGCAACCAGATCATTCCGTCACCTTCAGCCACATCAGAACTTGACAATAA
AACCCACAGTGAGAATTTGAAACAGGATATCCTGTACCTTCACAACTCTTTAGAGGAGGTAAACAGTGCC
CTAGTGGGGTACCAGAGACAGAATGATCTTAAACTCGAGGGAATGAACGAGACAGTCAGTAATCTTACCC
AGAGAGTCAACCTGATAGAAAGCGATGTGGTTGCTATGAGCAAGGTAGAAAAGAAAGCAAACCTGTCCTT
CAGCATGATGGGTGATAGATCTGCCACTCTGAAAAGACAGTCTTTGGATCAAGTCACCAACAGAACAGAT
ACAGTAAAAATCCAAAGCATAAAGAAAGAAGATAGTTCAAATTCTCAGGTATCCAAGCTAAGAGAGAAAC
TCCAGCTGATCAGTGCTCTTACAAACAAACCTGAGAGCAACAGGCCTCCAGAGACCGCCGATGAAGAGCA
AGTAGAGAGTTTCACATCAAAGCCATCAGCATTGCCAAAATTTTCACAGTTTCTTGGAGACCCAGTTGAG
AAAGCTGCCCAACTAAGACCTATCTCCCTACCAGGAGTTTCTAGCACTGAAGATCTTCAGGATTTATTCC
GCAAGACTGGCCAGGACGTGGATGGGAAGCTGACCTACCAGGAAATCTGGACCTCCCTAGGTTCTGCTAT
GCCAGAACCAGAGAGCTTGAGAGCATTTGATTCCGATGGAGATGGAAGATACTCATTCCTGGAGCTAAGG
GTAGCTTTAGGTATCTAG

Translation (495 aa):
MKKRKELNALIGLAGDSRRKKPKKGPSSHRLLRTEPPDSDSESSSEEEEEFGVVGNRSRFAKGDYLRCCK
ICYPLCGFVILAACVVACVGLVWMQVALKEDLDALKEKFRTMESNQKSSFQEIPKLNEELLSKQKQLEKI
ESGEMGLNKVWINITEMNKQISLLTSAVNHLKANVKSAADLISLPTTVEGLQKSVASIGNTLNSVHLAVE
ALQKTVDEHKKTMELLQSDMNQHFLKETPGSNQIIPSPSATSELDNKTHSENLKQDILYLHNSLEEVNSA
LVGYQRQNDLKLEGMNETVSNLTQRVNLIESDVVAMSKVEKKANLSFSMMGDRSATLKRQSLDQVTNRTD
TVKIQSIKKEDSSNSQVSKLREKLQLISALTNKPESNRPPETADEEQVESFTSKPSALPKFSQFLGDPVE
KAAQLRPISLPGVSSTEDLQDLFRKTGQDVDGKLTYQEIWTSLGSAMPEPESLRAFDSDGDGRYSFLELR
VALGI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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