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Report for CCDS16458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16458.1 Public Mus musculus 2 Hsd17b12 23 108 98 CCDS HistoryNCBI Gene:56348Re-query CCDS DB by CCDS ID:16458.1Re-query CCDS DB by GeneID:56348See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028619.4 ENSMUSP00000028619.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028619.4Link to Ensembl Protein Viewer:ENSMUSP00000028619.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028619Re-query CCDS DB by Protein ID:ENSMUSP00000028619
Original member Current member NCBI NM_019657.4 NP_062631.1 Accepted alive Link to Nucleotide Sequence:NM_019657.4Link to Protein Sequence:NP_062631.1Re-query CCDS DB by Nucleotide ID:NM_019657Re-query CCDS DB by Protein ID:NP_062631Link to BLAST:NP_062631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062631.1 312 O70503-1 312 100% 0 0

Chromosomal Locations for CCDS 16458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 94033557 94033661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94033927 94034076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94043873 94043938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94045361 94045442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94052254 94052288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94065554 94065598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94066409 94066473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94083167 94083274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94114993 94115068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94117430 94117476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 94157710 94157869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGTGCGCTCCCCCGGCGGCCGGCTTCCTGTACTGGGTGGGCGCGAGCACCATTGCCTACCTGGCCC
TGCGAGCCTCGTACTCGCTCTTCAGGGCCTTCCAGGTGTGGTGCGTGGGCAACGAGGCCTTGGTCGGTCC
GCGACTCGGAGAATGGGCAGTTGTTACAGGTGGCACTGATGGAATTGGAAAAGCATATGCAGAAGAGTTA
GCAAAACGTGGAATGAAGATTGTCCTGATCAGCAGGTCCCAAGATAAACTGAATCAGGTTTCCAACAACA
TCAAAGAAAAATTCAACGTTGAAACAAGGACCATTGCTGTCGACTTTTCATTGGATGATATTTATGATAA
AATTAAGACAGGCCTGTCTGGTCTTGAGATTGGCGTTTTAGTGAACAACGTGGGCATGTCATACGAGTAT
CCGGAATACTTTCTGGAAATTCCCGACTTGGACAACACCATCAAGAAACTGATAAATATTAATGTGCTTT
CCGTTTGCAAGGTGACACGCTTGGTGCTGCCTGGCATGGTAGAAAGATCTAAAGGGGTGATTCTCAACAT
CTCCTCAGCCAGTGGCATGCTCCCAGTTCCATTGTTGACAATCTACTCTGCAACCAAGGCCTTTGTAGAT
TTCTTCTCTCAGTGCCTCCATGAGGAGTATAAGAGCAAGGGCATCTTTGTGCAGAGTGTCATGCCATACC
TTGTAGCTACAAAACTGGCAAAAATACAGAAGCCGACTTTGGATAAGCCCTCTGCAGAGACATTTGTGAA
GTCTGCAATTAAAACAGTAGGTTTGCAGACCCGAACCACTGGATATGTGATCCACTCTCTCATGGGCTCA
ATAAACTCAATCATGCCTCGTTGGATGTATTTTAAAATAATCATGGGTTTCAGCAAGTCTTTGCGGAATC
GCTACCTGAAGAAAAGGAAGAAGAACTAA

Translation (312 aa):
MECAPPAAGFLYWVGASTIAYLALRASYSLFRAFQVWCVGNEALVGPRLGEWAVVTGGTDGIGKAYAEEL
AKRGMKIVLISRSQDKLNQVSNNIKEKFNVETRTIAVDFSLDDIYDKIKTGLSGLEIGVLVNNVGMSYEY
PEYFLEIPDLDNTIKKLININVLSVCKVTRLVLPGMVERSKGVILNISSASGMLPVPLLTIYSATKAFVD
FFSQCLHEEYKSKGIFVQSVMPYLVATKLAKIQKPTLDKPSAETFVKSAIKTVGLQTRTTGYVIHSLMGS
INSIMPRWMYFKIIMGFSKSLRNRYLKKRKKN


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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