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Report for CCDS12436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12436.1 Public Homo sapiens 19 GARRE1 24 110 108 CCDS HistoryNCBI Gene:9710Re-query CCDS DB by CCDS ID:12436.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299505.8 ENSP00000299505.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299505.8Link to Ensembl Protein Viewer:ENSP00000299505.4Re-query CCDS DB by Nucleotide ID:ENST00000299505Re-query CCDS DB by Protein ID:ENSP00000299505
Original member Current member NCBI NM_014686.5 NP_055501.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014686.5Link to Protein Sequence:NP_055501.2Re-query CCDS DB by Nucleotide ID:NM_014686Re-query CCDS DB by Protein ID:NP_055501Link to BLAST:NP_055501.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055501.2 1070 O15063 1070 100% 0 0

Chromosomal Locations for CCDS 12436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34300474 34300968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34319907 34320116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34327421 34327561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34327771 34327866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34327990 34328151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34330189 34330347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34333704 34333801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34339867 34339992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34341422 34342455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34347877 34348042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34349016 34349153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34351514 34351592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34352647 34352955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3213 nt):
ATGTATTGCTGCAGTGCCCAGGACAGTAAAATGGACTACAAGCGGCGCTTCCTGCTTGGCGGGTCCAAGC
AGAAGGTGCAGCAGCACCAGCAATACCCGATGCCTGAGCTGGGCCGAGCACTGAGTGCTCCCCTGGCATC
CACGGCCACCACTGCCCCCCTGGGCAGTCTGACCGCTGCAGGCAGCTGCCACCATGCCATGCCCCACACT
ACTCCTATCGCCGACATCCAGCAGGGCATCTCCAAGTATCTGGATGCCCTGAACGTCTTCTGCCGTGCCA
GTACTTTCCTCACAGATCTCTTCAGCACTGTGTTCAGGAACTCTCACTACTCAAAGGCAGCCACACAGCT
CAAAGATGTGCAGGAGCATGTCATGGAAGCAGCCAGTCGGCTGACCTCGGCCATAAAGCCTGAGATCGCC
AAGATGCTAATGGAACTTAGTGCTGGGGCTGCAAATTTTACGGATCAGAAGGAATTCAGTCTCCAGGACA
TTGAGGTGTTGGGGCGATGTTTCCTGACTGTGGTGCAAGTCCATTTCCAGTTTTTGACTCATGCGTTACA
GAAGGTCCAGCCGGTGGCTCACTCTTGCTTTGCTGAGGTCATCGTGCCAGAAAAAAAGAACAGCGGCAGT
GGCGGCGGCTTATCTGGCATGGGCCACACACCTGAAGTAGAGGAAGCTGTGCGGTCCTGGCGGGGGGCTG
CTGAGGCGACATCTAGACTAAGAGAAAGAGGCTGTGATGGTTGCCTGGCAGGAATTGAAGTTCAACAACT
CTTTTGTTCTCAAAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAACTGAACATAAAAATCGACAGTGCT
TTGCAAGCATATAAGATAGCTCTGGAAAGCTTAGGACACTGTGAATATGCAATGAAAGCCGGCTTCCACC
TGAATCCAAAGGCGATTGAAGCAAGTTTGCAGGGCTGCTGCAGCGAGGCGGAAGCCCAGCAGACGGGGCG
GAGGCAGACACCCCCGCAGCCCATGCAGTGTGAGCTCCCCACCGTCCCTGTGCAGATAGGATCGCACTTC
CTGAAGGGCGTCTCCTTTAATGAGTCGGCCGCCGACAATCTGAAACTTAAGACGCATACAATGTTACAGC
TGATGAAGGAGGCAGGCTGCTATAATGGAATCACATCCAGGGATGATTTTCCTGTGACTGAAGTGCTGAA
CCAGGTTTGCCCTTCCACATGGCGAGGTGCCTGCAAGACGGCGGTGCAGCTGCTGTTTGGCCAGGCTGGA
CTGGTGGTGGTTGACACAGCACAGATTGAGAATAAAGAAGCCTATGCCCCCCAGATCAGTTTAGAAGGCT
CTAGAATCGTGGTTCAAGTCCCATCCACATGGTGCCTGAAAGAAGACCCTGCTACCATGTCCCTGCTGCA
GAGAAGCCTTGATCCTGAGAAGACCCTGGGTCTAGTGGACGTGCTCTACACAGCTGTGCTGGACCTAAAC
CGCTGGAGGGCTGGAAGGGAGCAAGCTTTACCCTGCATACAGATCCAGCTGCAAAGGGAGATCTGTGATT
TTGGCAACCAGGCTGACCTGCCTTCTGGAAATGGAAACAAATCTTCAGGTGGCCTGCAGAAGACATTCTC
CAAACTGACATCCCGGTTCACCAAGAAAGCTTCATGTACCAGCTCCAGCAGCAGCACAAATTATTCCATC
CAAAATACCCCTTCCAAAAACATCTTCATAGCTGGATGTTCCGAAGAGAAGGCCAAAATGCCTGGCAATA
TTGATACAAGGTTACAAAGCATTTTGAACATTGGTAATTTCCCCAGGACTACAGACCCTTCACAGTCAGC
TCAGAATTCCAGTAATACAGTGGCCAATGGCTTTCTCATGGAGAGGCGTGAGAACTTCCTGCATGGAGAT
GACGGCAAGGATGAGAAGGGTATGAACTTACCAACTGATCAGGAAATGCAAGAGGTGATAGATTTTCTCT
CGGGCTTTAACATGGGCCAGTCACATCAGGGCTCTCCGTTGGTGACAAGGCATAATTCTGCTGCCACAGC
CATGGTGACTGAGCAGAAGGCAGGAGCCATGCAACCACAGCAGCCGTCACTGCCTGTGCCCCCTCCACCA
CGGGCACCCCAGGCTGGGGCACACACACCTCTGACACCCCAGCCGGGACTGGCACCTCAGCAGCAGTCCC
CAAAGCAGCAACAACCTCAAGTCCAATACTACCAACACCTACTCCAGCCCATTGGACCGCAGCAGCCCCC
GCCCCAGCCTCGGGCACCTGGGAAATGGGTACATGGCTCATCCCAGCAGCCAGCGCAGGCTGTTGGAGCA
GGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATATCTGATCTCAGTTCTGACTTGTACAGCTTGGGTCTGG
TGAGCAGCTATATGGATAATGTGATGTCAGAGGTTCTGGGACAGAAGCCGCAGGGACCTAGAAATAACAC
CTGGCCCAACCGTGACCAAAGTGATGGAGTCTTTGGAATGCTGGGAGAGATTCTGCCTTTTGATCCTGCA
GTGGGCTCAGACCCAGAGTTTGCACGCTATGTGGCAGGAGTGAGCCAGGCGATGCAGCAGAAGCGGCAGG
CCCAGCACGGTCGCCGGCCAGGCAACCCCCGGGGCAACTGGCCGCCTATGGATGACGCGCATCGGACCTG
GCCCTTCCCCGAGTTCTTCACAGAAGGGGATGGCCTGCACGGTGGCTGGTCGGGTGCTCAGGGAGACTCT
GCCAGCTCGAGTGATGAGACATCCTCAGCCAACGGGGACAGCTTGTTCTCCATGTTTTCAGGGCCTGACC
TCGTTGCTGCTGTCAAGCAGAGAAGGAAACACAGCAGTGGAGAGCAAGACACCAGCACGCTGCCCTCACC
ACCTCTCCTCACCACGGTGGAGGATGTGAACCAGGATAACAAAACCAAAACGTGGCCACCCAAAGCACCC
TGGCAGCACCCTTCCCCGCTTCCCAGCACGCTGCCCAGCCCCAGCGCACCACTCTATGCAGTCACCAGCC
CTGGCAGCCAGTGGAACGACACCATGCAGATGCTGCAGTCCCCAGTGTGGGCCGCAACCAACGACTGCAG
TGCCGCTGCCTTCTCCTATGTGCAGACCCCACCCCAGCCCCCACCCCCACCAGCACACAAGGCAGCACCC
AAGGGCTTCAAGGCCTTCCCTGGGAAGGGTGAGCGCAGGCCAGCCTATCTGCCCCAGTACTGA

Translation (1070 aa):
MYCCSAQDSKMDYKRRFLLGGSKQKVQQHQQYPMPELGRALSAPLASTATTAPLGSLTAAGSCHHAMPHT
TPIADIQQGISKYLDALNVFCRASTFLTDLFSTVFRNSHYSKAATQLKDVQEHVMEAASRLTSAIKPEIA
KMLMELSAGAANFTDQKEFSLQDIEVLGRCFLTVVQVHFQFLTHALQKVQPVAHSCFAEVIVPEKKNSGS
GGGLSGMGHTPEVEEAVRSWRGAAEATSRLRERGCDGCLAGIEVQQLFCSQSAAIPEHQLKELNIKIDSA
LQAYKIALESLGHCEYAMKAGFHLNPKAIEASLQGCCSEAEAQQTGRRQTPPQPMQCELPTVPVQIGSHF
LKGVSFNESAADNLKLKTHTMLQLMKEAGCYNGITSRDDFPVTEVLNQVCPSTWRGACKTAVQLLFGQAG
LVVVDTAQIENKEAYAPQISLEGSRIVVQVPSTWCLKEDPATMSLLQRSLDPEKTLGLVDVLYTAVLDLN
RWRAGREQALPCIQIQLQREICDFGNQADLPSGNGNKSSGGLQKTFSKLTSRFTKKASCTSSSSSTNYSI
QNTPSKNIFIAGCSEEKAKMPGNIDTRLQSILNIGNFPRTTDPSQSAQNSSNTVANGFLMERRENFLHGD
DGKDEKGMNLPTDQEMQEVIDFLSGFNMGQSHQGSPLVTRHNSAATAMVTEQKAGAMQPQQPSLPVPPPP
RAPQAGAHTPLTPQPGLAPQQQSPKQQQPQVQYYQHLLQPIGPQQPPPQPRAPGKWVHGSSQQPAQAVGA
GLSPLGQWPGISDLSSDLYSLGLVSSYMDNVMSEVLGQKPQGPRNNTWPNRDQSDGVFGMLGEILPFDPA
VGSDPEFARYVAGVSQAMQQKRQAQHGRRPGNPRGNWPPMDDAHRTWPFPEFFTEGDGLHGGWSGAQGDS
ASSSDETSSANGDSLFSMFSGPDLVAAVKQRRKHSSGEQDTSTLPSPPLLTTVEDVNQDNKTKTWPPKAP
WQHPSPLPSTLPSPSAPLYAVTSPGSQWNDTMQMLQSPVWAATNDCSAAAFSYVQTPPQPPPPPAHKAAP
KGFKAFPGKGERRPAYLPQY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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