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Report for CCDS829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
829.1 Public Homo sapiens 1 CD53 24 110 108 CCDS HistoryNCBI Gene:963Re-query CCDS DB by CCDS ID:829.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271324.6 ENSP00000271324.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000271324.6Link to Ensembl Protein Viewer:ENSP00000271324.5Re-query CCDS DB by Nucleotide ID:ENST00000271324Re-query CCDS DB by Protein ID:ENSP00000271324
Original member Current member EBI ENST00000648608.1 ENSP00000497382.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648608.1Link to Ensembl Protein Viewer:ENSP00000497382.1Re-query CCDS DB by Nucleotide ID:ENST00000648608Re-query CCDS DB by Protein ID:ENSP00000497382
Original member Current member NCBI NM_000560.4 NP_000551.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000560.4Link to Protein Sequence:NP_000551.1Re-query CCDS DB by Nucleotide ID:NM_000560Re-query CCDS DB by Protein ID:NP_000551Link to BLAST:NP_000551.1
Original member Current member NCBI NM_001040033.2 NP_001035122.1 Accepted alive Link to Nucleotide Sequence:NM_001040033.2Link to Protein Sequence:NP_001035122.1Re-query CCDS DB by Nucleotide ID:NM_001040033Re-query CCDS DB by Protein ID:NP_001035122Link to BLAST:NP_001035122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000551.1 219 P19397 219 100% 0 0
NP_001035122.1 219 P19397 219 100% 0 0

Chromosomal Locations for CCDS 829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110891409 110891471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110892345 110892533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110894327 110894401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110894960 110895055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110896653 110896733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110897809 110897892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110899124 110899195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGGCATGAGTAGCTTGAAACTGCTGAAGTATGTCCTGTTTTTCTTCAACTTGCTCTTTTGGATCTGTG
GCTGCTGCATTTTGGGCTTTGGGATCTACCTGCTGATCCACAACAACTTCGGAGTGCTCTTCCATAACCT
CCCCTCCCTCACGCTGGGCAATGTGTTTGTCATCGTGGGCTCTATTATCATGGTAGTTGCCTTCCTGGGC
TGCATGGGCTCTATCAAGGAAAACAAGTGTCTGCTTATGTCGTTCTTCATCCTGCTGCTGATTATCCTCC
TTGCTGAGGTGACCTTGGCCATCCTGCTCTTTGTATATGAACAGAAGCTGAATGAGTATGTGGCTAAGGG
TCTGACCGACAGCATCCACCGTTACCACTCAGACAATAGCACCAAGGCAGCGTGGGACTCCATCCAGTCA
TTTCTGCAGTGTTGTGGTATAAATGGCACGAGTGATTGGACCAGTGGCCCACCAGCATCTTGCCCCTCAG
ATCGAAAAGTGGAGGGTTGCTATGCGAAAGCAAGACTGTGGTTTCATTCCAATTTCCTGTATATCGGAAT
CATCACCATCTGTGTATGTGTGATTGAGGTGTTGGGGATGTCCTTTGCACTGACCCTGAACTGCCAGATT
GACAAAACCAGCCAGACCATAGGGCTATGA

Translation (219 aa):
MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVGSIIMVVAFLG
CMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTDSIHRYHSDNSTKAAWDSIQS
FLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHSNFLYIGIITICVCVIEVLGMSFALTLNCQI
DKTSQTIGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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