NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42136.1 Public Homo sapiens 16 EIF3CL 24 110 108 CCDS HistoryNCBI Gene:728689Re-query CCDS DB by CCDS ID:42136.1Re-query CCDS DB by GeneID:728689See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42136.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380876.5 ENSP00000370258.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380876.5Link to Ensembl Protein Viewer:ENSP00000370258.5Re-query CCDS DB by Nucleotide ID:ENST00000380876Re-query CCDS DB by Protein ID:ENSP00000370258
Original member Current member EBI ENST00000398944.7 ENSP00000381917.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398944.7Link to Ensembl Protein Viewer:ENSP00000381917.3Re-query CCDS DB by Nucleotide ID:ENST00000398944Re-query CCDS DB by Protein ID:ENSP00000381917
Original member Current member NCBI NM_001099661.2 NP_001093131.1 Accepted alive Link to Nucleotide Sequence:NM_001099661.2Link to Protein Sequence:NP_001093131.1Re-query CCDS DB by Nucleotide ID:NM_001099661Re-query CCDS DB by Protein ID:NP_001093131Link to BLAST:NP_001093131.1
Original member Current member NCBI NM_001317856.1 NP_001304785.1 Accepted alive Link to Nucleotide Sequence:NM_001317856.1Link to Protein Sequence:NP_001304785.1Re-query CCDS DB by Nucleotide ID:NM_001317856Re-query CCDS DB by Protein ID:NP_001304785Link to BLAST:NP_001304785.1
Original member Current member NCBI NM_001317857.2 NP_001304786.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001317857.2Link to Protein Sequence:NP_001304786.1Re-query CCDS DB by Nucleotide ID:NM_001317857Re-query CCDS DB by Protein ID:NP_001304786Link to BLAST:NP_001304786.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093131.1 914 B5ME19 914 100% 0 0
NP_001304785.1 914 B5ME19 914 100% 0 0
NP_001304786.1 914 B5ME19 914 100% 0 0

Chromosomal Locations for CCDS 42136.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28379798 28379880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28379976 28380138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28380292 28380379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28380468 28380533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28380632 28380791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28383118 28383481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28388058 28388282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28388508 28388698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28390291 28390384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28390520 28390645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28390840 28390981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28391752 28391855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28391980 28392142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28399871 28399998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28400377 28400486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28400615 28400669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28400859 28400984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28401207 28401396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28401539 28401604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28403518 28403618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2745 nt):
ATGTCGCGGTTTTTCACCACCGGTTCGGACAGCGAGTCCGAGTCGTCCTTGTCCGGGGAGGAGCTCGTCA
CCAAACCTGTCGGAGGCAACTATGGCAAACAGCCATTGTTGCTGAGCGAGGATGAAGAAGATACCAAGAG
AGTTGTCCGCAGTGCCAAGGACAAGAGGTTTGAGGAGCTGACCAACCTTATCCGGACCATCCGTAATGCC
ATGAAGATTCGTGATGTCACCAAGTGCCTGGAAGAGTTTGAGCTCCTGGGAAAAGCATATGGGAAGGCCA
AAAGCATTGTGGACAAAGAAGGTGTCCCCCGGTTCTATATCCGCATCCTGGCTGACCTAGAGGACTATCT
TAATGAGCTTTGGGAAGATAAGGAAGGGAAGAAGAAGATGAACAAGAACAATGCCAAGGCTCTGAGCACC
TTGCGTCAGAAGATCCGAAAATACAACCGTGATTTCGAGTCCCATATCACAAGCTACAAGCAGAACCCCG
AGCAGTCTGCGGATGAAGATGCTGAGAAAAATGAGGAGGATTCAGAAGGCTCTTCAGATGAGGATGAGGA
TGAGGACGGAGTCAGTGCTGCAACTTTCTTGAAGAAGAAATCAGAAGCTCCTTCTGGGGAGAGTCGCAAG
TTCCTCAAAAAGATGGATGATGAAGATGAGGACTCAGAAGATTCCGAAGATGATGAAGACTGGGACACAG
GTTCCACATCTTCCGATTCCGACTCAGAGGAGGAAGAAGGGAAACAAACCGCGCTGGCCTCAAGATTTCT
TAAAAAGGCACCCACCACAGATGAGGACAAGAAGGCAGCCGAGAAGAAACGGGAGGACAAAGCTAAGAAG
AAGCACGACAGGAAATCCAAGCGCCTGGATGAGGAGGAGGAGGAGGACAATGAAGGCGGGGAGTGGGAAA
GGGTCCGGGGCGGAGTGCCGTTGGTTAAGGAGAAGCCAAAAATGTTTGCCAAGGGAACTGAGATCACCCA
TGCTGTTGTTATCAAGAAACTGAATGAGATCCTACAGGCACGAGGCAAGAAGGGAACTGATCGTGCTGCC
CAGATTGAGCTGCTGCAACTGCTGGTTCAGATTGCAGCGGAAAACAACCTGGGAGAGGGCGTCATTGTCA
AGATCAAGTTCAATATCATCGCCTCTCTCTATGACTACAACCCCAACCTGGCAACCTACATGAAGCCAGA
GATGTGGGGGAAGTGCCTGGACTGCATCAATGAGCTGATGGATATCCTGTTTGCAAATCCCAACATTTTT
GTTGGAGAGAATATTCTGGAAGAGAGTGAGAACCTGCACAACGCTGACCAGCCACTGCGTGTCCGTGGCT
GCATCCTAACTCTGGTGGAACGAATGGATGAAGAATTTACCAAAATAATGCAAAATACTGACCCTCACTC
CCAAGAGTACGTGGAGCACTTGAAGGATGAGGCCCAGGTGTGTGCCATCATCGAGCGTGTGCAGCGCTAC
CTGGAGGAGAAGGGCACTACCGAGGAGGTCTGCCGCATCTACCTGCTGCGCATCCTGCACACCTACTACA
AGTTTGATTACAAGGCCCATCAGCGACAGCTGACCCCGCCTGAGGGCTCCTCAAAGTCTGAGCAAGACCA
GGCAGAAAATGAGGGCGAGGACTCGGCTGTGTTGATGGAGAGACTGTGCAAGTACATCTACGCCAAGGAC
CGCACAGACCGGATCCGCACATGTGCCATCCTCTGCCACATCTACCACCATGCTCTGCACTCGCGCTGGT
ACCAGGCCCGCGACCTCATGCTCATGAGCCACTTGCAGGACAACATTCAGCATGCAGACCCGCCAGTGCA
GATCCTTTACAACCGCACCATGGTGCAGCTGGGCATCTGTGCCTTCCGCCAAGGCCTGACCAAGGACGCA
CACAACGCCCTGCTGGACATCCAGTCGAGTGGCCGAGCCAAGGAGCTTCTGGGCCAGGGCCTGCTGCTGC
GCAGCCTGCAGGAGCGCAACCAGGAGCAGGAGAAGGTGGAGCGGCGCCGTCAGGTCCCCTTCCACCTGCA
CATCAACCTGGAGCTGCTGGAGTGTGTCTACCTGGTGTCTGCCATGCTCCTGGAGATCCCCTACATGGCC
GCCCATGAGAGCGATGCCCGCCGACGCATGATCAGCAAGCAGTTCCACCACCAGCTGCGCGTGGGCGAGC
GACAGCCCCTGCTGGGTCCCCCTGAGTCCATGCGGGAACATGTGGTCGCTGCCTCCAAGGCCATGAAGAT
GGGTGACTGGAAGACCTGTCACAGTTTTATCATCAATGAGAAGATGAATGGGAAAGTGTGGGACCTTTTC
CCCGAGGCTGACAAAGTCCGCACCATGCTGGTTAGGAAGATCCAGGAAGAGTCACTGAGGACCTACCTCT
TCACCTACAGCAGTGTCTATGACTCCATCAGCATGGAGACGCTGTCAGACATGTTTGAGCTGGATCTGCC
CACTGTGCACTCCATCATCAGCAAAATGATCATTAATGAGGAGCTGATGGCCTCCCTGGACCAGCCAACA
CAGACAGTGGTGATGCACCGCACTGAGCCCACTGCCCAGCAGAACCTGGCTCTGCAGCTGGCCGAGAAGC
TGGGCAGCCTGGTGGAGAACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCG
AGACCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCT
CAGACGGCCTACTGA

Translation (914 aa):
MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNA
MKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALST
LRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRK
FLKKMDDEDEDSEDSEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKK
KHDRKSKRLDEEEEEDNEGGEWERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAA
QIELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIF
VGENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVCAIIERVQRY
LEEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKD
RTDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDA
HNALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMA
AHESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLF
PEADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPT
QTVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQS
QTAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH