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Report for CCDS21661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21661.1 Public Mus musculus 7 Tpp1 23 108 98 CCDS HistoryNCBI Gene:12751Re-query CCDS DB by CCDS ID:21661.1Re-query CCDS DB by GeneID:12751See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033184.5 ENSMUSP00000033184.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033184.5Link to Ensembl Protein Viewer:ENSMUSP00000033184.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033184Re-query CCDS DB by Protein ID:ENSMUSP00000033184
Original member Current member NCBI NM_009906.6 NP_034036.1 Accepted alive Link to Nucleotide Sequence:NM_009906.6Link to Protein Sequence:NP_034036.1Re-query CCDS DB by Nucleotide ID:NM_009906Re-query CCDS DB by Protein ID:NP_034036Link to BLAST:NP_034036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034036.1 562 O89023 562 100% 0 0

Chromosomal Locations for CCDS 21661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105746632 105746772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105746943 105747068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105747387 105747545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105747659 105747779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105748582 105748651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105748883 105749071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105749225 105749423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105749537 105749712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105749860 105749987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105750180 105750330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105751590 105751729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105751982 105752053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105752171 105752187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGGACTCCAAGCCCGCCTCCTAGGGCTCCTTGCTCTCGTCATCGCCGGCAAATGCACTTACAACCCTG
AGCCGGACCAGCGGTGGATGCTGCCTCCAGGCTGGGTGTCCCTGGGCCGCGTGGATCCCGAGGAAGAGCT
GAGTCTCACTTTTGCGCTGAAACAGCGGAACCTGGAAAGACTCTCGGAGCTGGTGCAGGCTGTGTCGGAT
CCTAGCTCTCCTCAATATGGAAAGTACCTAACCCTGGAGGATGTAGCTGAGCTGGTTCAACCATCACCCC
TGACCCTCCTCACTGTCCAAAAGTGGCTCTCAGCAGCTGGAGCCCGGAACTGCGATTCAGTGACCACCCA
GGACTTTCTGACTTGCTGGCTGAGTGTCCGACAGGCTGAGCTGCTGCTCCCAGGAGCTGAGTTTCATCGC
TATGTAGGGGGACCTACAAAGACCCATGTTATAAGGTCCCCACATCCCTACCAGCTTCCCCAGGCCTTGG
CCCCTCATGTGGATTTTGTGGGGGGGCTGCACCGTTTCCCCCCTTCATCTCCAAGACAACGTCCAGAACC
ACAACAGGTAGGAACTGTTAGCCTGCACTTGGGAGTGACTCCGTCTGTGCTCCGTCAGCGATACAACCTG
ACAGCCAAAGATGTGGGCTCAGGCACCACCAACAATAGCCAGGCCTGTGCCCAGTTCCTGGAACAGTACT
TCCATAACTCGGATCTGACTGAGTTCATGCGCCTATTCGGTGGCAGTTTTACACACCAGGCCTCAGTAGC
AAAAGTTGTTGGAAAGCAAGGGCGAGGCCGAGCTGGGATCGAGGCCAGTCTAGATGTGGAATACCTGATG
AGTGCTGGTGCCAATATCTCCACTTGGGTCTACAGTAGCCCTGGCCGCCATGAGGCACAGGAGCCCTTCT
TACAATGGCTCCTGCTTCTTAGCAATGAGTCATCTTTGCCACATGTACATACTGTGAGTTACGGAGACGA
TGAAGACTCCCTCAGCAGCATCTACATCCAGAGAGTCAACACTGAGTTCATGAAGGCTGCTGCTCGGGGT
CTCACCCTCCTTTTTGCCTCAGGTGACACTGGAGCTGGGTGTTGGTCTGTCTCCGGAAGACACAAGTTCC
GCCCTAGCTTCCCTGCTTCCAGCCCCTATGTTACTACAGTTGGAGGAACCTCCTTCAAGAATCCTTTCCT
CATCACAGATGAAGTAGTTGACTATATCAGTGGTGGAGGCTTCAGCAATGTTTTCCCACGGCCTCCCTAC
CAGGAGGAAGCAGTGGCCCAGTTCTTGAAATCCAGCTCTCATCTACCACCATCCAGTTACTTCAATGCTA
GTGGCCGTGCCTACCCAGATGTTGCCGCACTATCTGATGGCTACTGGGTGGTCAGCAACATGGTCCCCAT
TCCATGGGTATCTGGAACCTCGGCCTCTACTCCAGTGTTTGGGGGAATTTTATCCTTGATAAATGAGCAC
AGAATCCTCAATGGCCGCCCTCCTCTTGGCTTTCTCAACCCCAGGCTCTATCAGCAGCATGGGACAGGAC
TCTTTGATGTAACCCACGGCTGCCATGAGTCCTGTCTGAATGAAGAAGTGGAGGGTCAGGGTTTCTGCTC
TGGTCCTGGCTGGGATCCTGTGACAGGTTGGGGAACACCCAACTTCCCAGCCCTACTGAAGACCCTGCTC
AACCCTTGA

Translation (562 aa):
MGLQARLLGLLALVIAGKCTYNPEPDQRWMLPPGWVSLGRVDPEEELSLTFALKQRNLERLSELVQAVSD
PSSPQYGKYLTLEDVAELVQPSPLTLLTVQKWLSAAGARNCDSVTTQDFLTCWLSVRQAELLLPGAEFHR
YVGGPTKTHVIRSPHPYQLPQALAPHVDFVGGLHRFPPSSPRQRPEPQQVGTVSLHLGVTPSVLRQRYNL
TAKDVGSGTTNNSQACAQFLEQYFHNSDLTEFMRLFGGSFTHQASVAKVVGKQGRGRAGIEASLDVEYLM
SAGANISTWVYSSPGRHEAQEPFLQWLLLLSNESSLPHVHTVSYGDDEDSLSSIYIQRVNTEFMKAAARG
LTLLFASGDTGAGCWSVSGRHKFRPSFPASSPYVTTVGGTSFKNPFLITDEVVDYISGGGFSNVFPRPPY
QEEAVAQFLKSSSHLPPSSYFNASGRAYPDVAALSDGYWVVSNMVPIPWVSGTSASTPVFGGILSLINEH
RILNGRPPLGFLNPRLYQQHGTGLFDVTHGCHESCLNEEVEGQGFCSGPGWDPVTGWGTPNFPALLKTLL
NP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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