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Report for CCDS34050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34050.1 Public Homo sapiens 4 GAR1 24 110 108 CCDS HistoryNCBI Gene:54433Re-query CCDS DB by CCDS ID:34050.1Re-query CCDS DB by GeneID:54433See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000226796.7 ENSP00000226796.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000226796.7Link to Ensembl Protein Viewer:ENSP00000226796.6Re-query CCDS DB by Nucleotide ID:ENST00000226796Re-query CCDS DB by Protein ID:ENSP00000226796
Original member Current member EBI ENST00000394631.7 ENSP00000378127.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394631.7Link to Ensembl Protein Viewer:ENSP00000378127.3Re-query CCDS DB by Nucleotide ID:ENST00000394631Re-query CCDS DB by Protein ID:ENSP00000378127
Original member Current member NCBI NM_018983.4 NP_061856.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018983.4Link to Protein Sequence:NP_061856.1Re-query CCDS DB by Nucleotide ID:NM_018983Re-query CCDS DB by Protein ID:NP_061856Link to BLAST:NP_061856.1
Original member Current member NCBI NM_032993.2 NP_127460.1 Accepted alive Link to Nucleotide Sequence:NM_032993.2Link to Protein Sequence:NP_127460.1Re-query CCDS DB by Nucleotide ID:NM_032993Re-query CCDS DB by Protein ID:NP_127460Link to BLAST:NP_127460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061856.1 217 Q9NY12-1 217 100% 0 0
NP_127460.1 217 Q9NY12-1 217 100% 0 0

Chromosomal Locations for CCDS 34050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109816165 109816378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109817936 109818090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109819001 109819060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109822347 109822488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109823965 109824033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109824418 109824431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGTCTTTTCGAGGCGGAGGTCGTGGAGGCTTTAATCGAGGTGGTGGAGGTGGCGGCTTCAACCGAGGTG
GCAGCAGCAACCACTTCCGAGGTGGAGGCGGCGGTGGAGGCGGCGGCAATTTCAGAGGCGGCGGCAGGGG
AGGATTTGGACGAGGGGGTGGCCGCGGAGGCTTTAACAAAGGCCAAGACCAAGGACCTCCAGAACGTGTA
GTCTTATTAGGAGAGTTCCTGCATCCCTGTGAAGATGACATAGTTTGTAAATGTACCACAGATGAAAATA
AGGTGCCTTATTTCAATGCTCCTGTTTACTTAGAAAACAAAGAACAAATTGGAAAAGTGGATGAAATATT
TGGACAACTCAGAGATTTTTATTTTTCAGTTAAGTTGTCAGAAAACATGAAGGCTTCATCCTTTAAAAAA
CTACAGAAGTTTTATATAGACCCATATAAGCTGCTGCCACTGCAGAGGTTTTTACCTCGACCTCCAGGTG
AGAAAGGACCTCCAAGAGGTGGTGGCAGGGGAGGCCGAGGAGGAGGAAGAGGAGGAGGTGGCAGAGGTGG
TGGCAGAGGCGGTGGTTTTAGAGGTGGAAGAGGAGGTGGAGGTGGGGGCTTCAGAGGAGGAAGAGGTGGT
GGTTTCAGAGGGAGAGGACATTAA

Translation (217 aa):
MSFRGGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGGGRGGFGRGGGRGGFNKGQDQGPPERV
VLLGEFLHPCEDDIVCKCTTDENKVPYFNAPVYLENKEQIGKVDEIFGQLRDFYFSVKLSENMKASSFKK
LQKFYIDPYKLLPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGGGGGGFRGGRGG
GFRGRGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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