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Report for CCDS27241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27241.1 Public Mus musculus 14 Loxl2 23 108 98 CCDS HistoryNCBI Gene:94352Re-query CCDS DB by CCDS ID:27241.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022660.13 ENSMUSP00000022660.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022660.13Link to Ensembl Protein Viewer:ENSMUSP00000022660.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022660Re-query CCDS DB by Protein ID:ENSMUSP00000022660
Original member Current member EBI ENSMUST00000100420.3 ENSMUSP00000097987.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100420.3Link to Ensembl Protein Viewer:ENSMUSP00000097987.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100420Re-query CCDS DB by Protein ID:ENSMUSP00000097987
Original member Current member NCBI NM_033325.2 NP_201582.2 Accepted alive Link to Nucleotide Sequence:NM_033325.2Link to Protein Sequence:NP_201582.2Re-query CCDS DB by Nucleotide ID:NM_033325Re-query CCDS DB by Protein ID:NP_201582Link to BLAST:NP_201582.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_201582.2 776 P58022-1 776 100% 0 0

Chromosomal Locations for CCDS 27241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69633927 69634290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69644696 69644871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69660639 69660850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69663900 69664122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69667267 69667450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69673382 69673533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69675676 69675843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69677813 69677975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69682095 69682338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69689028 69689143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69690134 69690270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69692314 69692425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69693040 69693119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGGAGCTCCATTTTGGCTCCTGCCTCTCCGGCTGTTTGGCTCTGCTTGTCTTGCTGCCTTCCCTGAGCC
TAGCACAGTACGAGGGCTGGCCCTACCAGCTCCAGTACCCTGAGTACTTCCAGCAGCCCGCTCCTGAGCA
CCATCAGCGGCAGGTGCCCTCCGATGTGGTCAAGATCCAGGTCCGCCTGGCGGGCCAGAAGAGGAAGCAC
AATGAGGGCCGCGTGGAGGTCTACTACGAAGGCCAGTGGGGCACGGTGTGCGACGATGACTTCTCGATCC
ATGCCGCCCATGTGGTCTGCCGGCAAGTGGGCTATGTAGAGGCCAAGTCCTGGGCTGCCAGCTCCTCCTA
CGGTCCAGGCGAAGGCCCCATCTGGTTGGACAATATCTACTGTACTGGCAAAGAGTCGACCCTGGCATCT
TGCTCCTCCAATGGCTGGGGTGTCACTGACTGCAAGCACACTGAAGACGTTGGAGTGGTGTGTAGTGAGA
AAAGAATTCCTGGCTTCAAATTTGACAATTCGTTGATCAACCAAATAGAGAGCCTAAATATACAGGTGGA
AGACATCCGGATTCGGCCCATCCTTTCTGCCTTTCGCCATCGCAAGCCTGTGACAGAGGGCTACGTGGAG
GTGAAGGAGGGCAAGGCTTGGAAGCAGATCTGCAACAAACACTGGACAGCCAAGAATTCCCACGTGGTCT
GTGGCATGTTCGGCTTCCCTGCAGAGAAGACCTACAACCCCAAAGCCTATAAAACCTTTGCCTCGCGGAG
GAAGCTGCGTTACTGGAAGTTTTCTATGAACTGCACGGGCACTGAAGCGCATATCTCCAGCTGCAAGCTG
GGCCCTTCCGTGACCCGGGACCCTGTGAAGAACGCCACCTGTGAGAACGGGCAGCCAGCTGTGGTCAGTT
GTGTGCCTAGCCAGATCTTCAGCCCCGATGGACCCTCAAGGTTCCGGAAAGCCTACAAGCCAGAGCAACC
CTTGGTGCGCCTGAGAGGTGGAGCCCAGGTCGGGGAGGGCCGAGTGGAGGTGCTGAAGAATGGAGAATGG
GGAACCATCTGCGATGACAAGTGGGACCTGGTATCTGCCAGTGTGGTCTGCCGAGAGCTGGGCTTTGGGA
CCGCTAAAGAGGCCATCACAGGCTCCAGACTAGGGCAAGGGATTGGGCCCATCCATCTCAATGAAGTCCA
GTGCACAGGGACTGAGAAGTCCATCATAGACTGCAAATTCAACACAGAGTCTCAAGGCTGCAACCATGAA
GAAGATGCCGGGGTGCGATGCAACATCCCCATCATGGGTTTCCAGAAAAAGGTGCGCCTGAATGGAGGCC
GCAATCCTTATGAGGGCCGAGTGGAGGTGCTAACAGAGAGAAATGGGTCCCTTGTTTGGGGGACTGTATG
CGGCCAGAACTGGGGCATTGTGGAAGCCATGGTGGTCTGCCGGCAGCTAGGCCTGGGCTTTGCCAGCAAT
GCCTTTCAGGAGACCTGGTACTGGCATGGAAATATCTTCGCCAACAACGTGGTCATGAGTGGAGTGAAGT
GCTCAGGAACGGAGCTGTCCCTAGCACACTGCCGCCATGACGAGGAGGTGGCCTGCCCCGAGGGCGGGGT
GCGGTTTGGTGCTGGAGTCGCCTGCTCGGAAACTGCACCTGACCTGGTGCTTAATGCTGAGATTGTCCAG
CAGACTGCCTACCTGGAGGACAGGCCCATGTCCTTGCTGCAGTGTGCCATGGAGGAGAACTGCCTCTCCG
CCTCCGCTGTGCACACCGACCCCACCAGAGGCCACCGGCGCCTTTTACGCTTCTCCTCCCAGATCCACAA
CAATGGCCAGTCTGACTTCCGCCCCAAGAATGGCCGCCATGCGTGGATTTGGCACGACTGCCACAGGCAC
TACCACAGCATGGAAGTCTTCACTTACTATGACCTGCTGAGCCTCAACGGCACCAAGGTGGCTGAGGGCC
ACAAGGCCAGCTTCTGCCTGGAGGACACTGAGTGTGAGGGAGACATTCAGAAGAGTTACGAGTGTGCCAA
CTTTGGAGAACAAGGCATCACCATGGGCTGCTGGGACATGTACCGTCATGACATTGACTGCCAGTGGATA
GACATCACCGATGTGCCCCCTGGAGACTACCTGTTCCAGGTTGTCATTAACCCCAACTATGAAGTGCCAG
AATCAGATTTCTCTAACAACATCATGAAGTGCAGGAGCCGCTATGATGGCTACCGCATCTGGATGTACAA
CTGTCACGTAGGTGGAGCCTTCAGTGAGGAGACAGAACAGAAGTTCGAACACTTCAGTGGACTTCTAAAT
AACCAGCTCTCTGTACAGTAA

Translation (776 aa):
MELHFGSCLSGCLALLVLLPSLSLAQYEGWPYQLQYPEYFQQPAPEHHQRQVPSDVVKIQVRLAGQKRKH
NEGRVEVYYEGQWGTVCDDDFSIHAAHVVCRQVGYVEAKSWAASSSYGPGEGPIWLDNIYCTGKESTLAS
CSSNGWGVTDCKHTEDVGVVCSEKRIPGFKFDNSLINQIESLNIQVEDIRIRPILSAFRHRKPVTEGYVE
VKEGKAWKQICNKHWTAKNSHVVCGMFGFPAEKTYNPKAYKTFASRRKLRYWKFSMNCTGTEAHISSCKL
GPSVTRDPVKNATCENGQPAVVSCVPSQIFSPDGPSRFRKAYKPEQPLVRLRGGAQVGEGRVEVLKNGEW
GTICDDKWDLVSASVVCRELGFGTAKEAITGSRLGQGIGPIHLNEVQCTGTEKSIIDCKFNTESQGCNHE
EDAGVRCNIPIMGFQKKVRLNGGRNPYEGRVEVLTERNGSLVWGTVCGQNWGIVEAMVVCRQLGLGFASN
AFQETWYWHGNIFANNVVMSGVKCSGTELSLAHCRHDEEVACPEGGVRFGAGVACSETAPDLVLNAEIVQ
QTAYLEDRPMSLLQCAMEENCLSASAVHTDPTRGHRRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRH
YHSMEVFTYYDLLSLNGTKVAEGHKASFCLEDTECEGDIQKSYECANFGEQGITMGCWDMYRHDIDCQWI
DITDVPPGDYLFQVVINPNYEVPESDFSNNIMKCRSRYDGYRIWMYNCHVGGAFSEETEQKFEHFSGLLN
NQLSVQ


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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