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Report for CCDS21803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21803.1 Public Mus musculus 7 Scnn1g 23 108 98 CCDS HistoryNCBI Gene:20278Re-query CCDS DB by CCDS ID:21803.1Re-query CCDS DB by GeneID:20278See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000221.5 ENSMUSP00000000221.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000221.5Link to Ensembl Protein Viewer:ENSMUSP00000000221.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000221Re-query CCDS DB by Protein ID:ENSMUSP00000000221
Original member Current member NCBI NM_011326.3 NP_035456.1 Accepted alive Link to Nucleotide Sequence:NM_011326.3Link to Protein Sequence:NP_035456.1Re-query CCDS DB by Nucleotide ID:NM_011326Re-query CCDS DB by Protein ID:NP_035456Link to BLAST:NP_035456.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035456.1 655 Q9WU39 655 100% 0 0

Chromosomal Locations for CCDS 21803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 121737918 121738234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121740297 121740615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121742253 121742443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121743653 121743756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121746587 121746750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121760391 121760489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121762378 121762495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121763011 121763089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121763171 121763228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121763420 121763481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121766238 121766313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121767169 121767549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGCGCCTGGAGAGAAGATCAAAGCCAAAATCAAAAAGAATCTGCCAGTTCGAGGCCCCCAGGCACCGA
CCATTAAGGACCTGATGCATTGGTACTGCCTGAACACCAACACCCACGGCTGCCGGCGCATCGTGGTGTC
CCGAGGCCGCCTTCGGCGCCTGTTGTGGATTGCGTTCACGCTGACAGCAGTGGCCCTCATTATCTGGCAG
TGCGCCCTCCTCGTCTTCTCTTTCTACACCGTCTCTGTCTCCATCAAAGTCCACTTCCAGAAACTGGATT
TCCCCGCTGTCACTATCTGCAATATCAACCCCTACAAGTACAGTGCTGTGAGTGACCTCCTGACTGACTT
GGACAGTGAGACAAAACAGGCCTTGCTGTCCTTGTATGGGGTCAAAGATGTTCTAGACAGTACACCTCGG
AAACGCCGGGAAGCAGGATCCATGCGGTCCACGTGGGAAGGCACACCACCCAGATTTCTCAACCTGATCC
CATTGTTGGTCTTCAATGAGAACGAGAAGGGAAAGGCCAGGGACTTCTTCACTGGTCGGAAGCGGAAAAT
CAGTGGGAAAATCATACACAAGGCTTCTAATGTCATGCACGTTCATGAGTCGAAGAAACTGGTGGGATTT
CAGTTGTGCTCAAATGACACCTCTGACTGTGCCACCTACACCTTCAGCTCAGGAATCAATGCCATCCAGG
AGTGGTACAAACTTCACTACATGAATATCATGGCACAGGTGCCTCTAGAGAAGAAAATCAACATGAGCTA
TTCTGCCGAAGAACTGCTGGTGACCTGCTTCTTCGATGGGATGTCCTGTGATGCCAGGAACTTCACTCTT
TTCCACCATCCAATGTATGGGAACTGCTACACGTTCAACAACAGAGAAAACGCCACCATCCTCAGCACCT
CCATGGGAGGCAGTGAGTATGGTCTGCAAGTCATCTTATACATAAACGAAGATGAGTACAACCCCTTCCT
GGTGTCATCCACTGGAGCCAAGGTGCTTGTCCATCAGCAGAATGAATACCCTTTCATCGAAGACGTGGGG
ACCGAGATCGAGACAGCAATGTCCACTTCCATAGGAATGCACCTGACAGAATCCTTCAAGCTGAGCGAAC
CTTACAGCCAGTGCACAGAGGACGGCAGCGATGTGCCCGTCACAAACATCTACAATGCTGCCTATTCCCT
CCAGATCTGCCTTTACTCATGCTTCCAAACGAAGATGGTGGAAAAATGTGGCTGTGCCCAGTACAGTCAG
CCTCTACCTCCAGCAGCCAATTACTGCAACTACCAGCAACACCCCAACTGGATGTATTGCTACTACCAGC
TGTACCAGGCCTTTGTCCGGGAAGAACTGGGCTGCCAATCAGTGTGCAAGCAATCCTGCAGCTTTAAGGA
ATGGACACTGACCACCAGCTTGGCACAGTGGCCATCTGAGGCTTCTGAGAAATGGTTGCTGAATGTTCTC
ACCTGGGACCAAAGCCAGCAAATAAACAAAAAGCTCAACAAGACTGACCTGGCCAAGCTCTTGATATTCT
ACAAAGACCTGAACCAAAGATCCATCATGGAGAGCCCAGCCAACAGTATTGAGATGCTCCTGTCTAACTT
TGGTGGACAGCTCGGCCTGTGGATGAGCTGCTCGGTCGTCTGTGTCATCGAAATCATCGAAGTCTTCTTC
ATTGATTTCTTCTCTATTATTGCCCGCCGCCAGTGGCAGAAAGCCAAGGATTGGTGGGCCCGTAGGCGGA
CACCACCCTCCACTGAGACTCCCTCCAGCCAGCAGGGTCAGGATAATCCAGCCCTGGATACGGACGATGA
TCTGCCCACTTTTACCTCTGCTATGCGCCTGCCTCCAGCCCCGGAGGCTCCGGTGCCTGGCACACCACCC
CCCAGATACAATACCTTGCGCTTGGACAGTGCCTTTTCCTCCCAGCTCACAGACACTCAGTTGACCAATG
AGTTCTAA

Translation (655 aa):
MAPGEKIKAKIKKNLPVRGPQAPTIKDLMHWYCLNTNTHGCRRIVVSRGRLRRLLWIAFTLTAVALIIWQ
CALLVFSFYTVSVSIKVHFQKLDFPAVTICNINPYKYSAVSDLLTDLDSETKQALLSLYGVKDVLDSTPR
KRREAGSMRSTWEGTPPRFLNLIPLLVFNENEKGKARDFFTGRKRKISGKIIHKASNVMHVHESKKLVGF
QLCSNDTSDCATYTFSSGINAIQEWYKLHYMNIMAQVPLEKKINMSYSAEELLVTCFFDGMSCDARNFTL
FHHPMYGNCYTFNNRENATILSTSMGGSEYGLQVILYINEDEYNPFLVSSTGAKVLVHQQNEYPFIEDVG
TEIETAMSTSIGMHLTESFKLSEPYSQCTEDGSDVPVTNIYNAAYSLQICLYSCFQTKMVEKCGCAQYSQ
PLPPAANYCNYQQHPNWMYCYYQLYQAFVREELGCQSVCKQSCSFKEWTLTTSLAQWPSEASEKWLLNVL
TWDQSQQINKKLNKTDLAKLLIFYKDLNQRSIMESPANSIEMLLSNFGGQLGLWMSCSVVCVIEIIEVFF
IDFFSIIARRQWQKAKDWWARRRTPPSTETPSSQQGQDNPALDTDDDLPTFTSAMRLPPAPEAPVPGTPP
PRYNTLRLDSAFSSQLTDTQLTNEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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