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Report for CCDS42595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42595.1 Public Homo sapiens 19 LRRC4B 24 110 108 CCDS HistoryNCBI Gene:94030Re-query CCDS DB by CCDS ID:42595.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42595.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000389201.7 ENSP00000373853.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000389201.7Link to Ensembl Protein Viewer:ENSP00000373853.3Re-query CCDS DB by Nucleotide ID:ENST00000389201Re-query CCDS DB by Protein ID:ENSP00000373853
Original member Current member EBI ENST00000599957.5 ENSP00000471502.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000599957.5Link to Ensembl Protein Viewer:ENSP00000471502.1Re-query CCDS DB by Nucleotide ID:ENST00000599957Re-query CCDS DB by Protein ID:ENSP00000471502
Original member Current member EBI ENST00000652263.1 ENSP00000498662.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000652263.1Link to Ensembl Protein Viewer:ENSP00000498662.1Re-query CCDS DB by Nucleotide ID:ENST00000652263Re-query CCDS DB by Protein ID:ENSP00000498662
Original member Current member NCBI NM_001080457.2 NP_001073926.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080457.2Link to Protein Sequence:NP_001073926.1Re-query CCDS DB by Nucleotide ID:NM_001080457Re-query CCDS DB by Protein ID:NP_001073926Link to BLAST:NP_001073926.1
Original member Current member NCBI NM_001348568.1 NP_001335497.1 Accepted alive Link to Nucleotide Sequence:NM_001348568.1Link to Protein Sequence:NP_001335497.1Re-query CCDS DB by Nucleotide ID:NM_001348568Re-query CCDS DB by Protein ID:NP_001335497Link to BLAST:NP_001335497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073926.1 713 Q9NT99 713 100% 0 0
NP_001335497.1 713 Q9NT99 713 100% 0 0

Chromosomal Locations for CCDS 42595.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 50517571 50519415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50548542 50548838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2142 nt):
ATGGCGCGTGCCCGCGGCTCCCCGTGCCCCCCGCTGCCGCCCGGTAGGATGTCCTGGCCCCACGGGGCAT
TGCTCTTCCTCTGGCTCTTCTCCCCACCCCTGGGGGCCGGTGGAGGTGGAGTGGCCGTGACGTCTGCCGC
CGGAGGGGGCTCCCCGCCGGCCACCTCCTGCCCCGTGGCCTGCTCCTGCAGCAACCAGGCCAGCCGGGTG
ATCTGCACACGGAGAGACCTGGCCGAGGTCCCAGCCAGCATCCCGGTCAACACGCGGTACCTGAACCTGC
AAGAGAACGGCATCCAGGTGATCCGGACGGACACGTTCAAGCACCTGCGGCACCTGGAGATTCTGCAGCT
GAGCAAGAACCTGGTGCGCAAGATCGAGGTGGGCGCCTTCAACGGGCTGCCCAGCCTCAACACGCTGGAG
CTTTTTGACAACCGGCTGACCACGGTGCCCACGCAGGCCTTCGAGTACCTGTCCAAGCTGCGGGAGCTCT
GGCTGCGGAACAACCCCATCGAGAGCATCCCCTCCTACGCCTTCAACCGCGTGCCCTCGCTGCGGCGCCT
GGACCTGGGCGAGCTCAAGCGGCTGGAATACATCTCGGAGGCGGCCTTCGAGGGGCTGGTCAACCTGCGC
TACCTCAACCTGGGCATGTGCAACCTCAAGGACATCCCCAACCTGACGGCCCTGGTGCGCCTGGAGGAGC
TGGAGCTGTCGGGCAACCGGCTGGACCTGATCCGCCCGGGCTCCTTCCAGGGTCTCACCAGCCTGCGCAA
GCTGTGGCTCATGCACGCCCAGGTAGCCACCATCGAGCGCAACGCCTTCGACGACCTCAAGTCGCTGGAG
GAGCTCAACCTGTCCCACAACAACCTGATGTCGCTGCCCCACGACCTCTTCACGCCCCTGCACCGCCTCG
AGCGCGTGCACCTCAACCACAACCCCTGGCATTGCAACTGCGACGTGCTCTGGCTGAGCTGGTGGCTCAA
GGAGACGGTGCCCAGCAACACGACGTGCTGCGCCCGCTGTCATGCGCCCGCCGGCCTCAAGGGGCGCTAC
ATTGGGGAGCTGGACCAGTCGCATTTCACCTGCTATGCGCCCGTCATCGTGGAGCCGCCCACGGACCTCA
ACGTCACCGAGGGCATGGCTGCCGAGCTCAAATGCCGCACGGGCACCTCCATGACCTCCGTCAACTGGCT
GACGCCCAACGGCACCCTCATGACCCACGGCTCCTACCGCGTGCGCATCTCCGTCCTGCATGACGGCACG
CTTAACTTCACCAACGTCACCGTGCAGGACACGGGCCAGTACACGTGCATGGTGACGAACTCAGCCGGCA
ACACCACCGCCTCGGCCACGCTCAACGTCTCGGCCGTGGACCCCGTGGCGGCCGGGGGCACCGGCAGCGG
CGGGGGCGGCCCTGGGGGCAGTGGTGGTGTTGGAGGGGGCAGTGGCGGCTACACCTACTTCACCACGGTG
ACCGTGGAGACCCTGGAGACGCAGCCCGGAGAGGAGGCCCTGCAGCCGCGGGGGACGGAGAAGGAACCGC
CAGGGCCCACGACAGACGGTGTCTGGGGTGGGGGCCGGCCTGGGGACGCGGCCGGCCCTGCCTCGTCTTC
TACCACGGCACCCGCCCCGCGCTCCTCGCGGCCCACGGAGAAGGCGTTCACGGTGCCCATCACGGATGTG
ACGGAGAACGCCCTCAAGGACCTGGACGACGTCATGAAGACCACCAAAATCATCATCGGCTGCTTCGTGG
CCATCACGTTCATGGCCGCGGTGATGCTCGTGGCCTTCTACAAGCTGCGCAAGCAGCACCAGCTCCACAA
GCACCACGGGCCCACGCGCACCGTGGAGATCATCAACGTGGAGGACGAGCTGCCCGCCGCCTCGGCCGTG
TCCGTGGCCGCCGCGGCCGCCGTGGCCAGTGGGGGTGGTGTGGGCGGGGACAGCCACCTGGCCCTGCCCG
CCCTGGAGCGAGACCACCTCAACCACCACCACTACGTGGCTGCCGCCTTCAAGGCGCACTACAGCAGCAA
CCCCAGCGGCGGGGGCTGCGGGGGCAAAGGCCCGCCTGGCCTCAACTCCATCCACGAACCTCTGCTCTTC
AAGAGCGGCTCCAAGGAGAACGTGCAAGAGACGCAGATCTGA

Translation (713 aa):
MARARGSPCPPLPPGRMSWPHGALLFLWLFSPPLGAGGGGVAVTSAAGGGSPPATSCPVACSCSNQASRV
ICTRRDLAEVPASIPVNTRYLNLQENGIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLE
LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR
YLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLE
ELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRY
IGELDQSHFTCYAPVIVEPPTDLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGT
LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVSAVDPVAAGGTGSGGGGPGGSGGVGGGSGGYTYFTTV
TVETLETQPGEEALQPRGTEKEPPGPTTDGVWGGGRPGDAAGPASSSTTAPAPRSSRPTEKAFTVPITDV
TENALKDLDDVMKTTKIIIGCFVAITFMAAVMLVAFYKLRKQHQLHKHHGPTRTVEIINVEDELPAASAV
SVAAAAAVASGGGVGGDSHLALPALERDHLNHHHYVAAAFKAHYSSNPSGGGCGGKGPPGLNSIHEPLLF
KSGSKENVQETQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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