NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS891.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
891.1 Public Homo sapiens 1 CD101 24 110 108 CCDS HistoryNCBI Gene:9398Re-query CCDS DB by CCDS ID:891.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 891.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256652.8 ENSP00000256652.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000256652.8Link to Ensembl Protein Viewer:ENSP00000256652.4Re-query CCDS DB by Nucleotide ID:ENST00000256652Re-query CCDS DB by Protein ID:ENSP00000256652
Original member Current member EBI ENST00000369470.1 ENSP00000358482.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369470.1Link to Ensembl Protein Viewer:ENSP00000358482.1Re-query CCDS DB by Nucleotide ID:ENST00000369470Re-query CCDS DB by Protein ID:ENSP00000358482
Original member Current member EBI ENST00000682167.1 ENSP00000508039.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682167.1Link to Ensembl Protein Viewer:ENSP00000508039.1Re-query CCDS DB by Nucleotide ID:ENST00000682167Re-query CCDS DB by Protein ID:ENSP00000508039
Original member Current member NCBI NM_001256106.3 NP_001243035.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001256106.3Link to Protein Sequence:NP_001243035.1Re-query CCDS DB by Nucleotide ID:NM_001256106Re-query CCDS DB by Protein ID:NP_001243035Link to BLAST:NP_001243035.1
Original member Current member NCBI NM_001256109.3 NP_001243038.1 Accepted alive Link to Nucleotide Sequence:NM_001256109.3Link to Protein Sequence:NP_001243038.1Re-query CCDS DB by Nucleotide ID:NM_001256109Re-query CCDS DB by Protein ID:NP_001243038Link to BLAST:NP_001243038.1
Original member Current member NCBI NM_004258.6 NP_004249.2 Accepted alive Link to Nucleotide Sequence:NM_004258.6Link to Protein Sequence:NP_004249.2Re-query CCDS DB by Nucleotide ID:NM_004258Re-query CCDS DB by Protein ID:NP_004249Link to BLAST:NP_004249.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243035.1 1021 Q93033 1021 100% 0 0
NP_001243038.1 1021 Q93033 1021 100% 0 0
NP_004249.2 1021 Q93033 1021 100% 0 0

Chromosomal Locations for CCDS 891.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 117001818 117001860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117009850 117010230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117011550 117011966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117013406 117013792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117017090 117017473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117018156 117018560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117021573 117021983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117025509 117025904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 117033860 117034101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3066 nt):
ATGGCAGGCATCTCATATGTGGCATCTTTCTTTCTCCTTCTGACTAAGCTCAGCATTGGCCAGAGAGAAG
TAACAGTTCAGAAAGGACCACTGTTTAGAGCTGAAGGTTACCCAGTCAGCATTGGCTGCAATGTAACTGG
CCACCAGGGACCTTCTGAGCAGCATTTCCAGTGGTCTGTTTACCTGCCGACAAACCCGACCCAGGAAGTC
CAGATCATTAGCACCAAGGATGCTGCCTTCTCTTACGCAGTATATACGCAGCGGGTGCGAAGCGGAGACG
TCTACGTGGAGAGGGTCCAGGGCAACTCAGTCTTGTTGCACATCTCAAAACTCCAGATGAAGGATGCTGG
CGAGTATGAGTGTCACACACCAAACACTGATGAGAAATACTATGGAAGTTACAGTGCAAAGACTAATCTA
ATTGTTATTCCAGATACCCTCTCTGCCACCATGAGTTCTCAGACTCTCGGTAAGGAGGAAGGTGAGCCAT
TAGCCCTCACCTGTGAGGCATCCAAAGCCACAGCCCAACATACTCACCTCTCTGTCACCTGGTACCTAAC
ACAGGATGGAGGAGGAAGCCAAGCCACTGAGATTATTTCTCTCTCCAAAGATTTTATATTGGTCCCTGGG
CCCTTGTATACAGAGCGGTTTGCAGCCAGTGACGTACAGCTCAACAAACTGGGACCCACTACATTCAGGC
TGTCCATAGAGAGGCTCCAGTCCTCAGATCAGGGTCAGCTGTTCTGTGAGGCAACGGAATGGATTCAGGA
TCCAGATGAAACTTGGATGTTCATCACCAAAAAGCAGACCGATCAAACCACTCTGAGGATCCAGCCAGCA
GTGAAAGATTTTCAAGTCAACATTACAGCTGACAGCTTGTTTGCTGAAGGGAAACCCTTAGAACTGGTTT
GCCTGGTTGTAAGCAGTGGCCGTGACCCACAGCTTCAAGGCATTTGGTTCTTCAATGGGACTGAAATTGC
TCACATTGATGCTGGTGGAGTCCTGGGCCTGAAGAATGACTACAAAGAGAGAGCAAGTCAAGGAGAGCTC
CAGGTTTCAAAGTTAGGCCCCAAGGCTTTCTCTCTCAAGATCTTCTCTCTGGGCCCAGAGGATGAAGGCG
CCTACAGATGTGTGGTAGCAGAGGTCATGAAAACACGCACAGGTTCCTGGCAGGTGCTTCAGAGAAAGCA
GTCACCAGACAGCCACGTGCACCTGAGGAAGCCAGCAGCAAGAAGTGTGGTCATGTCTACCAAGAACAAG
CAGCAAGTTGTGTGGGAAGGAGAGACACTCGCCTTTCTCTGTAAGGCTGGTGGAGCTGAAAGTCCCCTGT
CTGTGAGCTGGTGGCACATCCCACGGGACCAGACACAGCCCGAGTTTGTGGCTGGCATGGGGCAGGATGG
CATTGTGCAGCTGGGTGCCTCCTATGGGGTACCCAGTTACCATGGCAACACAAGGCTGGAGAAAATGGAC
TGGGCCACCTTCCAGCTGGAGATCACCTTCACTGCCATCACAGACAGTGGCACATATGAGTGCAGAGTAT
CTGAGAAGTCTCGGAACCAGGCCAGAGATCTGAGCTGGACTCAGAAGATTTCAGTTACTGTAAAGTCTCT
GGAGTCAAGTTTACAAGTTAGTCTGATGAGCCGTCAGCCGCAAGTGATGTTAACCAACACCTTTGACCTG
TCCTGTGTCGTGAGGGCCGGTTACTCTGACCTCAAGGTGCCACTCACTGTGACGTGGCAGTTCCAGCCAG
CTAGCTCTCACATCTTCCACCAGCTTATTCGAATCACCCACAATGGCACTATTGAATGGGGGAATTTCCT
ATCCCGGTTCCAAAAGAAGACGAAAGTGTCGCAGTCTTTATTTCGTTCACAACTCCTAGTCCATGATGCC
ACTGAGGAAGAGACAGGAGTGTATCAGTGTGAAGTAGAAGTTTATGACAGAAATTCCCTATACAACAACC
GCCCCCCGAGGGCTTCTGCCATCTCTCACCCACTGAGGATAGCCGTCACTTTACCAGAGAGCAAGCTAAA
AGTGAATTCAAGGAGTCAAGTCCAAGAGCTCTCCATCAACTCCAACACTGATATAGAATGTAGCATCTTG
TCCCGGTCCAATGGAAACCTTCAGTTAGCCATTATTTGGTATTTTTCTCCTGTTTCCACTAATGCCTCTT
GGCTAAAGATCCTGGAGATGGACCAAACCAATGTTATAAAAACTGGGGATGAGTTTCACACCCCACAGAG
AAAACAAAAATTTCATACTGAGAAGGTTTCCCAAGACTTATTTCAGCTGCACATTCTGAATGTGGAAGAC
AGCGATCGGGGCAAATATCACTGTGCTGTGGAGGAATGGCTCCTGTCTACAAATGGCACTTGGCACAAGC
TTGGAGAAAAGAAGTCAGGACTAACAGAATTGAAACTCAAGCCCACAGGAAGTAAGGTACGTGTCTCCAA
AGTGTACTGGACCGAAAATGTGACTGAGCACAGAGAAGTGGCCATCCGCTGCAGCCTGGAGAGTGTAGGC
AGCTCAGCCACTCTGTACTCTGTGATGTGGTACTGGAACAGAGAAAACTCTGGAAGTAAATTGCTGGTGC
ACTTGCAACATGATGGCTTGCTGGAGTATGGGGAAGAGGGGCTCAGGAGGCACCTGCACTGTTACCGTTC
ATCCTCTACAGACTTTGTCCTGAAGCTTCATCAGGTGGAGATGGAGGATGCAGGAATGTACTGGTGTAGG
GTGGCAGAGTGGCAGCTCCATGGACACCCAAGCAAGTGGATTAATCAAGCATCCGATGAGTCACAGCGGA
TGGTGCTCACGGTGCTGCCTTCAGAGCCCACGCTTCCTTCCAGGATCTGCTCCTCGGCCCCTTTACTCTA
TTTCCTGTTCATCTGTCCCTTCGTCCTGCTCCTCCTTCTGCTCATCTCCCTCCTCTGCTTATACTGGAAG
GCCAGGAAGTTGTCAACACTGCGTTCCAACACACGGAAAGAAAAAGCTCTCTGGGTGGACTTGAAAGAGG
CTGGAGGTGTGACCACAAATAGGAGGGAAGACGAGGAGGAAGATGAAGGCAACTGA

Translation (1021 aa):
MAGISYVASFFLLLTKLSIGQREVTVQKGPLFRAEGYPVSIGCNVTGHQGPSEQHFQWSVYLPTNPTQEV
QIISTKDAAFSYAVYTQRVRSGDVYVERVQGNSVLLHISKLQMKDAGEYECHTPNTDEKYYGSYSAKTNL
IVIPDTLSATMSSQTLGKEEGEPLALTCEASKATAQHTHLSVTWYLTQDGGGSQATEIISLSKDFILVPG
PLYTERFAASDVQLNKLGPTTFRLSIERLQSSDQGQLFCEATEWIQDPDETWMFITKKQTDQTTLRIQPA
VKDFQVNITADSLFAEGKPLELVCLVVSSGRDPQLQGIWFFNGTEIAHIDAGGVLGLKNDYKERASQGEL
QVSKLGPKAFSLKIFSLGPEDEGAYRCVVAEVMKTRTGSWQVLQRKQSPDSHVHLRKPAARSVVMSTKNK
QQVVWEGETLAFLCKAGGAESPLSVSWWHIPRDQTQPEFVAGMGQDGIVQLGASYGVPSYHGNTRLEKMD
WATFQLEITFTAITDSGTYECRVSEKSRNQARDLSWTQKISVTVKSLESSLQVSLMSRQPQVMLTNTFDL
SCVVRAGYSDLKVPLTVTWQFQPASSHIFHQLIRITHNGTIEWGNFLSRFQKKTKVSQSLFRSQLLVHDA
TEEETGVYQCEVEVYDRNSLYNNRPPRASAISHPLRIAVTLPESKLKVNSRSQVQELSINSNTDIECSIL
SRSNGNLQLAIIWYFSPVSTNASWLKILEMDQTNVIKTGDEFHTPQRKQKFHTEKVSQDLFQLHILNVED
SDRGKYHCAVEEWLLSTNGTWHKLGEKKSGLTELKLKPTGSKVRVSKVYWTENVTEHREVAIRCSLESVG
SSATLYSVMWYWNRENSGSKLLVHLQHDGLLEYGEEGLRRHLHCYRSSSTDFVLKLHQVEMEDAGMYWCR
VAEWQLHGHPSKWINQASDESQRMVLTVLPSEPTLPSRICSSAPLLYFLFICPFVLLLLLLISLLCLYWK
ARKLSTLRSNTRKEKALWVDLKEAGGVTTNRREDEEEDEGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH