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Report for CCDS48937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48937.1 Public Mus musculus 11 Etv4 23 108 98 CCDS HistoryNCBI Gene:18612Re-query CCDS DB by CCDS ID:48937.1Re-query CCDS DB by GeneID:18612See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164750.7 ENSMUSP00000129261.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164750.7Link to Ensembl Protein Viewer:ENSMUSP00000129261.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164750Re-query CCDS DB by Protein ID:ENSMUSP00000129261
Original member Current member NCBI NM_008815.3 NP_032841.2 Accepted alive Link to Nucleotide Sequence:NM_008815.3Link to Protein Sequence:NP_032841.2Re-query CCDS DB by Nucleotide ID:NM_008815Re-query CCDS DB by Protein ID:NP_032841Link to BLAST:NP_032841.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032841.2 485 P28322-1 485 100% 0 0

Chromosomal Locations for CCDS 48937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101770366 101770590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101770969 101771070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101771328 101771500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101771689 101771757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101771881 101771955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101773609 101773877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101774081 101774245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101775318 101775441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101777093 101777146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101783967 101784014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101784230 101784323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101784517 101784576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGAGCGGAGGATGAAAGGCGGATACTTGGACCAGCGAGTGCCCTACACCTTCTGCAGCAAATCTCCCG
GAAATGGGAGCTTGGGCGAAGCGCTGATGGTCCCGCAGGGAAAGCTCATGGACCCGGGCTCCCTGCCGCC
TTCCGACTCAGAAGATCTCTTCCAGGACCTCAGTCACTTCCAAGAGACGTGGCTCGCAGAAGCTCAGGTA
CCGGACAGTGATGAGCAGTTTGTTCCTGATTTCCATTCAGAAAACTCTTTCCATAGCCCCACCACCAGGA
TCAAGAAGGAACCCCAGAGTCCCCGCACAGACCCCGCCCTGTCCTGCAGCAGGAAGCCACCACTCCCCTA
CCACCATGGAGAGCAGTGCCTTTACTCCAGTGCCTATGACTCCCCCAGACAAATCGCCATCAAGTCCCCC
GCCCCCGGTGCCCCTGGACAGTCGCCCCTGCAGCCCTTTTCCAGGGCAGAACAGCAGCAGAGCCTCCTGA
GAGCCTCCAGCTCTTCCCAGTCCCACCCTGGCCACGGGTACCTTGGTGAGCACAGCTCCGTCTTCCAGCA
GCCCGTGGACATGTGCCACTCCTTCACATCTCCTCAGGGAGGGGGCCGGGAACCTCTCCCAGCCCCCTAT
CAACACCAACTGTCGGAGCCCTGCCCACCCTACCCCCAGCAGAACTTCAAGCAGGAGTACCATGACCCCC
TGTACGAACAGGCTGGCCAGCCCGCTTCAAGCCAGGGTGGGGTCAGTGGGCACAGGTACCCAGGGGCGGG
GGTGGTGATCAAACAGGAGCGCACAGACTTCGCCTACGACTCAGATGTCCCTGGATGTGCATCAATGTAC
CTCCACCCAGAGGGCTTCTCTGGACCCTCTCCAGGTGATGGAGTGATGGGTTATGGCTATGAAAAATCCC
TTCGACCATTCCCAGATGATGTCTGCATTGTCCCTGAAAAATTTGAAGGAGACATCAAGCAGGAAGGGAT
TGGAGCTTTCCGGGAGGGGCCACCCTACCAGCGCCGGGGTGCCTTACAACTGTGGCAGTTTCTGGTGGCC
CTGCTGGATGACCCAACAAATGCTCATTTCATTGCTTGGACAGGCCGGGGAATGGAGTTTAAACTAATTG
AACCTGAAGAGGTTGCCAGGCTCTGGGGTATCCAGAAGAACCGGCCAGCCATGAATTATGACAAGCTGAG
CCGCTCGCTGCGATACTATTATGAGAAAGGCATCATGCAGAAGGTGGCTGGCGAACGCTACGTGTACAAG
TTTGTGTGCGAGCCGGAGGCCCTGTTCTCTCTGGCCTTCCCAGATAATCAACGTCCAGCTCTGAAGGCTG
AGTTTGACCGGCCAGTCAGTGAGGAGGACACAGTCCCTTTGTCCCACTTGGATGAGAGTCCTGCCTACCT
CCCAGAACTCACTGGCCCCGCTCCGCCCTTCGGCCACAGAGGTGGATATTCTTACTAG

Translation (485 aa):
MERRMKGGYLDQRVPYTFCSKSPGNGSLGEALMVPQGKLMDPGSLPPSDSEDLFQDLSHFQETWLAEAQV
PDSDEQFVPDFHSENSFHSPTTRIKKEPQSPRTDPALSCSRKPPLPYHHGEQCLYSSAYDSPRQIAIKSP
APGAPGQSPLQPFSRAEQQQSLLRASSSSQSHPGHGYLGEHSSVFQQPVDMCHSFTSPQGGGREPLPAPY
QHQLSEPCPPYPQQNFKQEYHDPLYEQAGQPASSQGGVSGHRYPGAGVVIKQERTDFAYDSDVPGCASMY
LHPEGFSGPSPGDGVMGYGYEKSLRPFPDDVCIVPEKFEGDIKQEGIGAFREGPPYQRRGALQLWQFLVA
LLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK
FVCEPEALFSLAFPDNQRPALKAEFDRPVSEEDTVPLSHLDESPAYLPELTGPAPPFGHRGGYSY


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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