NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19458.1 Public Mus musculus 5 Bmp3 23 108 98 CCDS HistoryNCBI Gene:110075Re-query CCDS DB by CCDS ID:19458.1Re-query CCDS DB by GeneID:110075See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19458.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031278.5 ENSMUSP00000031278.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031278.5Link to Ensembl Protein Viewer:ENSMUSP00000031278.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031278Re-query CCDS DB by Protein ID:ENSMUSP00000031278
Original member Current member NCBI NM_173404.5 NP_775580.1 Accepted alive Link to Nucleotide Sequence:NM_173404.5Link to Protein Sequence:NP_775580.1Re-query CCDS DB by Nucleotide ID:NM_173404Re-query CCDS DB by Protein ID:NP_775580Link to BLAST:NP_775580.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775580.1 468 Q8BHE5 468 100% 0 0

Chromosomal Locations for CCDS 19458.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 98855113 98855422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98872030 98872934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 98879738 98879929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1407 nt):
ATGGCCGGGGCGCGCGGGCTGCTCTGTCTATGGCTAGGTTACTTCTGCCTGAACCTGGCACAGGGACAGA
GACCAAACTTGCACCTCCCGGGACTCCGTGAGACTGAGCCAAGCGACCGCGCGACAGGTGGTAGCCCGAG
TCCGGACCTGAGGCCGCACGACAAGGTGTCGGAGCATATGCTGTGGCTCTATGACAGGTACAGCGGCAGC
AGTAGAGTCCAGGCTACCCGGACACCGGGCTCGCAGCTCCCGGGTCCTCAGCCCCTGCGCGGTGGTAACA
CGGTCCGCAGCTTCAGAGCCGCAGCCGCAGGAACTCCTCAAACGAAGGGGTTACACACCTTCAATCTGAC
TTCTCTAACCAAGTCGGAGAACATTTTGTCAGCCACACTGTATTTCTACGTTGGAGAATTAGTGAACATC
AGCTTGAGCTGTCCAGAACCCCAAGGATGCTCCCATCACACTCAGAGACAACACATCCAGATAGACCTCT
CTGCATGGATCCTCAAATCCAACCAAAGCCAGCTCTTGGGTCATCTGTCTGTAGATGTGGTCAGACCTTA
TAGAGACAGCGTGTCTTGGCTGTCAAAAGACATCACTCAGCTCTTAAGAAAGGCCAAGCAAAATGAAGAG
TTTCTCATAGGGTTTAACATTACCTCCAGAGCACACGAGCTACCCAAGAGGATGCTGTTTTTCCCGGAAC
CTTATATCTTGGTATACGCCAACGATGCTGCCATTTCTGAGCCAGAAAGCGTGGTATCCAGCTTACAGAG
ACACCGAGATTTCACAGCGGGAACTGGGCCCAGACTGGATAGCCACGTCAGAGAAGCCCTCTCGGTTGAG
AGGAGGAAGAAGCGCTCTACTGGGATCTTGCTGCCCTTGCAGAACAATGAGCTACCTGGGGCAGAGTATC
AGTACAAGGAGGAGGGAGCGTGGGAGGAGAGAAAGCCTTATAAGAGCCTTCAGACTCAGCCCCCTGAGAA
GAGTAGGAACAAAAAGAAACAGAGGAAAGGGTCCCATCAGAAGGGACAGACGCTGCAATTTGATGAGCAG
ACCCTGAAGAAGGCAAGGCGAAAGCAGTGGGTCGAACCTCGGAACTGTGCCAGGAGGTACCTTAAAGTGG
ACTTTGCTGATATCGGCTGGAGCGAATGGATTATCTCTCCCAAGTCATTTGATGCTTTCTACTGCTCTGG
AGCCTGCCAGTTCCCCATGCCAAAGTCTTTGAAACCATCAAATCACGCCACCATCCAGAGCATAGTGCGA
GCGGTGGGGGTCGTCTCCGGGATTCCCGAGCCTTGCTGTGTGCCGGAAAAGATGTCCTCACTCAGCATCT
TGTTCTTTGATGAAAACAAGAATGTAGTGCTCAAAGTCTACCCTAACATGACAGTCGACTCCTGTGCTTG
TAGATAA

Translation (468 aa):
MAGARGLLCLWLGYFCLNLAQGQRPNLHLPGLRETEPSDRATGGSPSPDLRPHDKVSEHMLWLYDRYSGS
SRVQATRTPGSQLPGPQPLRGGNTVRSFRAAAAGTPQTKGLHTFNLTSLTKSENILSATLYFYVGELVNI
SLSCPEPQGCSHHTQRQHIQIDLSAWILKSNQSQLLGHLSVDVVRPYRDSVSWLSKDITQLLRKAKQNEE
FLIGFNITSRAHELPKRMLFFPEPYILVYANDAAISEPESVVSSLQRHRDFTAGTGPRLDSHVREALSVE
RRKKRSTGILLPLQNNELPGAEYQYKEEGAWEERKPYKSLQTQPPEKSRNKKKQRKGSHQKGQTLQFDEQ
TLKKARRKQWVEPRNCARRYLKVDFADIGWSEWIISPKSFDAFYCSGACQFPMPKSLKPSNHATIQSIVR
AVGVVSGIPEPCCVPEKMSSLSILFFDENKNVVLKVYPNMTVDSCACR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH