NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29187.1 Public Mus musculus 18 Pcdhb22 23 108 98 CCDS HistoryNCBI Gene:93893Re-query CCDS DB by CCDS ID:29187.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29187.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000192409.1 ENSMUSP00000141521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192409.1Link to Ensembl Protein Viewer:ENSMUSP00000141521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192409Re-query CCDS DB by Protein ID:ENSMUSP00000141521
Original member NCBI NM_053147.3 NP_444377.3 Updated not alive Link to Nucleotide Sequence:NM_053147.3Link to Protein Sequence:NP_444377.3Re-query CCDS DB by Nucleotide ID:NM_053147Re-query CCDS DB by Protein ID:NP_444377
Current member NCBI NM_053147.4 NP_444377.3 Accepted alive Link to Nucleotide Sequence:NM_053147.4Link to Protein Sequence:NP_444377.3Re-query CCDS DB by Nucleotide ID:NM_053147Re-query CCDS DB by Protein ID:NP_444377Link to BLAST:NP_444377.3

Chromosomal Locations for CCDS 29187.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37518481 37520865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2385 nt):
ATGAAGATTGGAAGGGAACACAGAAAAAGGCAAGTTCTGTTGATCTTTCTCTTGCTGGGAGTGGTTGGGG
CGGGCTCGGAACCCCGCCGCTACTTTGTGATGGAGGAAACACCCAGTGGCACTGTTTTGGCAGATCTAGT
CCAGGACCTAGGGCTGGGAGTTGCGGAGCTAGCTGCTCGAGGAGCCCAGGTAGTCTCTGAGGAAAAGGAA
TCCCGCTTGCAGCTGGATCTACAGACTGGGAAGCTAATCTTAAATGAAAAACTGGACCGCGAGGAGCTGT
GCGGCTCCACTGAGCCCTGTGTCACTCATTTCCAAGTGTTACTGAAAAAACCACTGGAAATATTTCAAGC
TGAGCTACGAGTAGGAGACATTAATGATCATTCTCCTGAGTTTCCTGAAAGAGAAATGGCCGTGAAAATC
ATAGAGAATAGCCCTGTTGGCACTGCGTTTCTACTCAAAACAGCTCAGGATTTGGATGTGGGAAATAACA
GCGTTCAGAACTATAAGATTGGTACCAATTCTCATTTCCATGTTTCCATCCGCAACCGAGGTGATGGAAG
AAAATACCCAGAGCTGGTGCTGGACAAGGAGCTCGATCGCGAGGTGCAGGCAGCGTTCAGATTAACTCTG
ACAGCGCTAGATGGCGGTTCTCCGCCCAGGACTGGCACCTCGCAAATCCGCATTGTTGTCTTGGATGTCA
ATGACAATGCCCCTGAGTTTGCACAGGCTTTCTACCGGGTGCAAATTCCAGAGAACAGTCCCTCGGGTTC
CATGGTTGCTAAGGTCTCTGCTAAGGATTTAGACACTGGGACAAATGGAGAGGTATCATACTCTCTTTTT
CACAGTTCTCAGGAAATGAGCAAAACTTTTGAGCTAAACGCCCTGTCAGGAGAAGTTCGACTAATCAAAA
CACTGGACTTTGAGACAACACCTTCATATGAACTAGACATAGAGGCAACTGATGGCGGGGGTCTTTCTGG
AAAATGCTCTGTTTCTATTCAGGTGGTGGATGTCAACGATAATTACCCAGAACTAATTATATCATCGCTC
ACCAATCCAATCCCAGAAAATTCACCAGAGACAGAGGTGGCTCTGTTTCGGATTCGAGACCGAGACTCTG
GAGAGAATGGAAGGACAATTTGTTCCATCCAGGATGGTGTTCCCTTTACACTGGAACCTTCCGTTGAGAA
CTTCTATAGACTGGTGACAGATGGAGCTCTGGACAGAGAGATCAGAGCTGAGTACAACATTACTATCTCC
GTCACCGACCTGGGCATACCCAAGCTCACAACCCAGCACACCATAACAGTGCAGGTGTCCGACATCAACG
ACAATGCCCCCGCCTTTACCCAAGTCTCCTACACCATGCTCGTCCACGAGAACAACAGCCCAGCCCTGCA
CATAGGCACCATCAGCGCCACAGACTCAGACTCAGGCTCCAATGCCCACATCACCTACTCGTTGCTGCCG
GCCCAGGAGCCACAGCTGGCCCTCAACTCACTCATCTCCATCAACGCTGACAACGGGCAGCTGTTCGCGC
TCAGGGCGCTGGACTACGAGGCCCTGCAGGCCTTCGAGTTCCACGTGAGTGCCACAGACCGAGGCTCACC
AGCGCTCAGCAGCCAGGCTCTGGTGCGCATAGTGGTGCTGGACGACAATGACAATGCGCCCTTCGTGCTC
TACCCGATGCAGAATGCCTCTGCGCCCTGCACAGAGCTGCTGCCCAGGGCGGCAGAGCCCGGCTACCTGG
TCACCAAGGTGGTGGCTGTGGATCGCGACTCTGGCCAGAATGCCTGGCTGTCGTTCCAGCTGCTCAAGGC
TACAGAGCCCGGGTTGTTCAGCGTGTGGGCGCACAATGGTGAGGTGCGCACCACCAGGCTGTTGAGTGAG
CGAGATGTACCCAAGCACAGGCTGCTGCTGGTGGTCAAGGACAATGGAGAGCCTCCGCGCTCTGCTAGCG
TCACACTGCAGGTGCTAATGGTGGATGGCTTCTCTCAGCCCTACCTGCCTCTGCCAGAGGTGGTGCGCGA
CCCCAGTCACCAGGAAGGTGATGTGCTCACGCTGTACCTGGTCATAGCCTTGGCTTCTGTGTCTTCTCTC
TTCCTCTTGTCTGTGCTGCTGTTTGTGGGGGTGAGGCTGTGCAGGAGGGCCAGGGAGGTCTCTCTGGGTG
GCTGCTCTGTGCCTGAGGGACACTTTCCTGGCCACCTGGTGGATGTCAGCGGGGCAGGGACCCTGTCTCA
GAGCTACCAGTATGAGGTGTGTCTTACAGGAGATTCTCAGAGTAATGAGTTCAAATTCTTGAAGCCTGTG
TTTTCTGGTATTGTAGACCAAAACTATGGTAGGCAACCAGATGATCAGTCCTTCTCAAGTGTTTTAGGTA
TGTGA

Translation (794 aa):
MKIGREHRKRQVLLIFLLLGVVGAGSEPRRYFVMEETPSGTVLADLVQDLGLGVAELAARGAQVVSEEKE
SRLQLDLQTGKLILNEKLDREELCGSTEPCVTHFQVLLKKPLEIFQAELRVGDINDHSPEFPEREMAVKI
IENSPVGTAFLLKTAQDLDVGNNSVQNYKIGTNSHFHVSIRNRGDGRKYPELVLDKELDREVQAAFRLTL
TALDGGSPPRTGTSQIRIVVLDVNDNAPEFAQAFYRVQIPENSPSGSMVAKVSAKDLDTGTNGEVSYSLF
HSSQEMSKTFELNALSGEVRLIKTLDFETTPSYELDIEATDGGGLSGKCSVSIQVVDVNDNYPELIISSL
TNPIPENSPETEVALFRIRDRDSGENGRTICSIQDGVPFTLEPSVENFYRLVTDGALDREIRAEYNITIS
VTDLGIPKLTTQHTITVQVSDINDNAPAFTQVSYTMLVHENNSPALHIGTISATDSDSGSNAHITYSLLP
AQEPQLALNSLISINADNGQLFALRALDYEALQAFEFHVSATDRGSPALSSQALVRIVVLDDNDNAPFVL
YPMQNASAPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLSE
RDVPKHRLLLVVKDNGEPPRSASVTLQVLMVDGFSQPYLPLPEVVRDPSHQEGDVLTLYLVIALASVSSL
FLLSVLLFVGVRLCRRAREVSLGGCSVPEGHFPGHLVDVSGAGTLSQSYQYEVCLTGDSQSNEFKFLKPV
FSGIVDQNYGRQPDDQSFSSVLGM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH