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Report for CCDS29172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29172.1 Public Mus musculus 18 Pcdhb4 23 108 98 CCDS HistoryNCBI Gene:93875Re-query CCDS DB by CCDS ID:29172.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29172.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056712.3 ENSMUSP00000059770.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056712.3Link to Ensembl Protein Viewer:ENSMUSP00000059770.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000056712Re-query CCDS DB by Protein ID:ENSMUSP00000059770
Original member Current member NCBI NM_053129.3 NP_444359.3 Accepted alive Link to Nucleotide Sequence:NM_053129.3Link to Protein Sequence:NP_444359.3Re-query CCDS DB by Nucleotide ID:NM_053129Re-query CCDS DB by Protein ID:NP_444359Link to BLAST:NP_444359.3

Chromosomal Locations for CCDS 29172.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37307639 37309993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGAGACAGCGCTAGCAAAAATGTCACAGCAAAGGCAAGTTGTTTTTCTTACTATGTTGTTGCTTTTGT
GGGTGTCTGGTTCAGAGGCAATTAAATATTCCATGCCAGAAGAAACAGAGAGTGGCTACTTGGTGGCTAA
CCTGGCACAAGATCTGGGGATCAGGGTTGGGGAACTGGCAGCTAGAGAGGCACGAGTCCATCACAGAGGA
AACAAAGACCTCTTGCAGCTGGATGCAGAGACAGGAAATCTGTTCTTGAAGGAAAAATTAGACCGTGAGG
GGCTTTGCGGGGCGACAGAACCCTGTGTGCTGCACTTCCAGATCATACTGAAAAACCCTGTGCAGTTCTT
TCAAACTGAACTGCAGCTCACAGATATAAATGACCACTCTCCGGAGTTCCCTGACACGGAAATGCTCCTA
ACAATCCCTGAGAGCGCCCAGCCAGGAACTGTGTTTCCTCTGAAGGCAGCTCAGGACCCTGACATGGGGA
GCAACGCTATTCAGAACTACACAGTCAGTCCCAACCTCCATTTCCATGTCGTTACTCTCAGTCGCTCAGA
TGGCAGGAAATACCCAGAGCTGGTGCTGGACAGAGCCCTGGACAGGGAGGAGCAGCCTGAGCTCACTTTA
ATCCTCACCGCTCTGGATGGGGGAGCTCCACGAAGGTCTGGGATGACCACAGTTCATATTGAAATCATGG
ACATCAATGACAATGCTCCCCAGTTTGTACAATCGCTCTATGAGGTGCAGGTTCCCGAGAATTTCCCCCT
TGATGCCTTACTTGTCACGGTCTCTGCTAGGGATTTAGATGCTGGGATATATGGCAATATAGCCTACTCT
CTGTTTCAAGGTGATGGAGACTCCCAACCATTTGTAATAGATGAAATCACAGGAGAAATCCGTCTAAGCA
AAAAGTTGGACTTTGAGGTAACTCCATACTATAATGTGGAAATCGCAGCCACGGATGGAGGGGGACTTTC
AGGAAAATGCACTGTAGCTGTTCAGGTGTTGGATGTGAATGATAACGCCCCAGAGTTGACGGTCTCTACG
CTCTCAAGCCCTATCCCCGAAAACTCCCCAGAGACTGTCGTTGCAGTTTTTGGTGTTTTTGACCCAGATT
CTGGGGACAATGGAAGGATGGTGTGCTCTATTCAGAACGAACTTCCATTTCTTTTAAAGTCCACATTTGA
GAACTATTATACTTTAGCGACAGAGAGGCCACTGGATAGAGAGAGTATCGCTGAGTACAACATCACCATC
ACTGTCTCAGACATGGGCACACCCAGGCTCACAACCCAGCATACTATAAAAGTGCAGGTGTCTGACATCA
ACGACAACGCCCCCGCCTTCACGCAAACCTCCTACACCCTGTTTGTCCATGAGAACAACAGCCCCGCCCT
GCACATAGGCACCATCAGTGCCACAGACTCAGACTCGGGCTCCAATGCCCACATCACCTACTCGCTTCTG
CCGCCCCAGGACCCGCAGCTGGCCCTCTCCTCGCTCATCTCCATCAACGCTGACAACGGGCAGCTGTTTG
CGCTCAGGGCATTGGATTATGAGGCCCTGCAGGCCTTCGAGTTCCACGTGGGCGCCACAGATGGAGGTTC
GCCCGCGCTCAGCAGCCAGACTCTGGTGCGCGTGGTGGTGCTAGACGACAATGACAATGCGCCCTTCGTG
CTCTACCCACTGCAGAATGCTTCTGCGCCCTACACCGAGCTGCTGCCCAGGGCAGCGGAGCCTGGCTACC
TGGTCACCAAGGTGGTGGCAGTGGACCGCGACTCTGGTCAGAATGCCTGGCTGTCATTCCAGCTGCTCAA
GGCTACGGAGCCCGGGTTGTTCAGCGTGTGGGCGCACAATGGCGAGGTGCGCACCACCAGGCTGCTGAGC
GAGCGAGATGCACCCAAGCACAGGTTGCTGTTGCTGGTCAAGGACAATGGAGAGCCTCTGCGCTCTGCCA
GTGTCACAATGCACGTGCTAGTGGTGGATGGTTTCTCTCAGCCCTACCTGCCCCTGCCAGAGGTGGCGCT
GGATCCTACACGGGAAGAAGATAATCTCACGCTGTATCTTGTCATCTCCTTGGCATCTGTGTCTTCTCTC
TTCCTCTTGTCTGTGCTGCTGTTCATGGGGGCGAGGCTGTGCAGGAGGGCCAGGGAGGCCTCTCTGGGAG
GCTACTCTGTGCCTGAGGGACACTTTCCTGGCCACCTGGTGGACGTCAGCGGGGCAGGGACCCTGTCCCA
GAGCTATCAGTATGAGGTGTGTCTGAGCGGAGACTCTGGGATTACAGATTTTAAGTTCCTGAAGCCCAGC
AATCCCAATAGTCTGATTCCAGACAATTACATGTTGAATAGTTAA

Translation (784 aa):
METALAKMSQQRQVVFLTMLLLLWVSGSEAIKYSMPEETESGYLVANLAQDLGIRVGELAAREARVHHRG
NKDLLQLDAETGNLFLKEKLDREGLCGATEPCVLHFQIILKNPVQFFQTELQLTDINDHSPEFPDTEMLL
TIPESAQPGTVFPLKAAQDPDMGSNAIQNYTVSPNLHFHVVTLSRSDGRKYPELVLDRALDREEQPELTL
ILTALDGGAPRRSGMTTVHIEIMDINDNAPQFVQSLYEVQVPENFPLDALLVTVSARDLDAGIYGNIAYS
LFQGDGDSQPFVIDEITGEIRLSKKLDFEVTPYYNVEIAATDGGGLSGKCTVAVQVLDVNDNAPELTVST
LSSPIPENSPETVVAVFGVFDPDSGDNGRMVCSIQNELPFLLKSTFENYYTLATERPLDRESIAEYNITI
TVSDMGTPRLTTQHTIKVQVSDINDNAPAFTQTSYTLFVHENNSPALHIGTISATDSDSGSNAHITYSLL
PPQDPQLALSSLISINADNGQLFALRALDYEALQAFEFHVGATDGGSPALSSQTLVRVVVLDDNDNAPFV
LYPLQNASAPYTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLS
ERDAPKHRLLLLVKDNGEPLRSASVTMHVLVVDGFSQPYLPLPEVALDPTREEDNLTLYLVISLASVSSL
FLLSVLLFMGARLCRRAREASLGGYSVPEGHFPGHLVDVSGAGTLSQSYQYEVCLSGDSGITDFKFLKPS
NPNSLIPDNYMLNS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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