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Report for CCDS79628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79628.1 Public Mus musculus 18 Pcdhga6 23 108 98 CCDS HistoryNCBI Gene:93714Re-query CCDS DB by CCDS ID:79628.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000195823.1 ENSMUSP00000141803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195823.1Link to Ensembl Protein Viewer:ENSMUSP00000141803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195823Re-query CCDS DB by Protein ID:ENSMUSP00000141803
Original member Current member NCBI NM_033589.2 NP_291067.1 Accepted alive Link to Nucleotide Sequence:NM_033589.2Link to Protein Sequence:NP_291067.1Re-query CCDS DB by Nucleotide ID:NM_033589Re-query CCDS DB by Protein ID:NP_291067Link to BLAST:NP_291067.1

Chromosomal Locations for CCDS 79628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37707229 37709652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCGGCTCTGCAGAGGCGCCCGCCCTGCTGCGAGTTGCTCCTGCTTCTCAATCTCCTGTGGTGGTTGT
GGGGCTCAGAAGCTGGGCAGCTCCGCTACTCTATTCCCGAGGAAGTGGAGAAAGGCTCCTTCGTGGGCAG
CATCGCCAAAGACCTGGGGCTGCAGCCCCGCGAGCTGGCAGAGCGCGGGATTCGCATCATCTCCAGAGGT
AGGTCGCAGCTTTTCTCCCTAAACCAGCGAAGCGGCAGCTTGGTCACCGCGGGCAGGATAGACCGGGAGG
AGCTGTGCGCCCAGAGCGCGCCCTGTCTTGTGAGCTTTAACATCCTTATAGAAGATAAATTAAATCTTTA
TCCTGTGGAAGTAGAAATAGTGGACATTAATGACAATGCACCCAGATTCTTAAAGGAAGAAATGGAATTG
AAGATTCTTGAAAATGCAGCTCTATCCTCTCATTTTCTACTAATGGGTGTCTATGACCCCGATGTGGGAG
TGAACTCCATTCAGGGCTTCAAGCTCAGCGGTAGTAGTCACTTCTCAGTACATGTGCAAAGCCAAGACCA
TGGGCCCAAATACCCGGAGCTGGTGTTGGAGCACAGCCTGGACAGGGAAGAGGAAGCCGTTCACCACTTG
GTCCTTGTTGCCATGGATGGTGGTGACCCTGTCCGAACAGGCATGGCGCGAATTCTTGTAACTGTCGTAG
ATGTGAACGACAATGCTCCAGTATTTACTCAGCCTATCTATCGTGTGAGTGTCCCTGAAAACCTGCCTGT
GGGTACACGAGTGTTAACAGTTAACGCCACCGACCAGGATGAAGGAATCCATGCAGAAATAACATATTCC
TTTGTGAGGATCACAGAAGAAATCTCGCAGATTTTCTGCTTGAATCCTTTAACTGGGGAAATTTCCACTT
CCGAAACTCTAGACTATGAGGATTCAAGATTTTATGAGCTGGATGTTGAAGCCCGAGATCAATCAGATCT
TCAAGACCGAGCAAAAGTTTTAATAACCATCTTGGACATGAACGACAATGCACCGGAAGTAGTGGTTACA
TCTGGTAGCAGAGCAATTGCTGAAAACTCACCTTCAGGGACCGTAATTGCTCTTTTTCAAGTCTATGATA
AAGACTCTGAACGGAATGGCCTGGTAATATGCTCCATATCAGAAAGTCTCCCATTTAAATTGGAAGAGTC
ATTAGACAATTATTTTCGGTTAGTGACAAATACAGAACTGGATCGCGAACAGGTATCTTCGTATAACATC
ACTGTGACAGCCACTGACAGAGGAACACCACCTCTGTCAACAAAAATATTCATTTCCTTAGATGTGGCAG
ACATTAATGACAACCCACCTGTTTTTTCCCGTTCATCCTACTCTGTCTATGTCTCTGAGAATAACCCTAA
GGGCGTCTCCATCTTCTCTTTGAATGCAGTGGACCCTGACAGTGAAGAAAATGCAGAAATTATTTACTCT
CTGGCCAAAGAAACCCTTCAGGGAACACCTCTATCCTCCTTCCTCTCCATCAACTCCATCACTGGTGTCC
TGTATGCACTGTGTTCCTTTGACTATGAGCAGTTTAGAGAACTGAATCTACTGGTGACAGCCAGTGACAG
AGGGAAACCCCCACTTAGCAGCAATGTGTCACTTAACCTGTTTGTGCTGGACCAGAATGACAATGTACCT
GAGATTCTGTACCCTGTTCTCCCCACGGATGGTTCTACTGGTGTGGAGCTGGCCCCCCGCTCTGCAGAAC
CTGGATATCTAGTGACCAAAGTGGTGGCAGTGGACAAAGACTCAGGTCAGAATGCCTGGCTGTCCTACCG
CCTGATCAAGGCCAGTGAGCCAGGGCTCTTCTCAGTGGGACTACACACAGGTGAGATCCGCACAGCAAGG
GTCCTGCTGGACAGAGATGCTCTCAAGCAGAGCCTGGTGGTGGCTGTGCAGGACCATGGCCAGCCGCCTC
TCTCAGCTACTGTTACACTTACTGTGGCTGTGGCCAGCAGCATTCCTGACATCCTGGCTGACTTGGGCAG
CCTTGACCTTCCACACAAGTCTGAAGATTCAAGCCTTACAATCTACCTGGTGGTGGCGGTGGCCACTGTT
TCGTGCATCTTCTTTGCTTTTGTCATGGGGCTGCTGGTGCTCAGGCTGTGGCACTGGCACAAGTCAAGAT
TGCTGAAGGCCACAAGGAAAGGTGTGTCAAATATGTCCACTTCACATTTCGTGGGTATTGATGGGGTGCA
GGCTTTTCTACAGACCTATTCCCATGAGGTCTCCCTCACAGCAGACTCCAGGAAGAGCCATCTGATCTTC
CCCCAGCCCAACTATGCCCACACACTCATCAGTCAGGAGGGCTGTGAGAAAAATGAGCCTTTATTGATAC
AGGAAGACTCGGCTTTTTGCAAAGAGGAAGACTCTCTTGATCAGCAAGCCCCGCCCAACACTGACTGGCG
TTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCCAAC
AACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCT
CTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCA
CGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAA
CGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (932 aa):
MAALQRRPPCCELLLLLNLLWWLWGSEAGQLRYSIPEEVEKGSFVGSIAKDLGLQPRELAERGIRIISRG
RSQLFSLNQRSGSLVTAGRIDREELCAQSAPCLVSFNILIEDKLNLYPVEVEIVDINDNAPRFLKEEMEL
KILENAALSSHFLLMGVYDPDVGVNSIQGFKLSGSSHFSVHVQSQDHGPKYPELVLEHSLDREEEAVHHL
VLVAMDGGDPVRTGMARILVTVVDVNDNAPVFTQPIYRVSVPENLPVGTRVLTVNATDQDEGIHAEITYS
FVRITEEISQIFCLNPLTGEISTSETLDYEDSRFYELDVEARDQSDLQDRAKVLITILDMNDNAPEVVVT
SGSRAIAENSPSGTVIALFQVYDKDSERNGLVICSISESLPFKLEESLDNYFRLVTNTELDREQVSSYNI
TVTATDRGTPPLSTKIFISLDVADINDNPPVFSRSSYSVYVSENNPKGVSIFSLNAVDPDSEENAEIIYS
LAKETLQGTPLSSFLSINSITGVLYALCSFDYEQFRELNLLVTASDRGKPPLSSNVSLNLFVLDQNDNVP
EILYPVLPTDGSTGVELAPRSAEPGYLVTKVVAVDKDSGQNAWLSYRLIKASEPGLFSVGLHTGEIRTAR
VLLDRDALKQSLVVAVQDHGQPPLSATVTLTVAVASSIPDILADLGSLDLPHKSEDSSLTIYLVVAVATV
SCIFFAFVMGLLVLRLWHWHKSRLLKATRKGVSNMSTSHFVGIDGVQAFLQTYSHEVSLTADSRKSHLIF
PQPNYAHTLISQEGCEKNEPLLIQEDSAFCKEEDSLDQQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPN
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
RDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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