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Report for CCDS29192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29192.1 Public Mus musculus 18 Pcdhgc3 23 108 98 CCDS HistoryNCBI Gene:93706Re-query CCDS DB by CCDS ID:29192.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076807.6 ENSMUSP00000076085.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076807.6Link to Ensembl Protein Viewer:ENSMUSP00000076085.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000076807Re-query CCDS DB by Protein ID:ENSMUSP00000076085
Original member Current member NCBI NM_033581.3 NP_291059.1 Accepted alive Link to Nucleotide Sequence:NM_033581.3Link to Protein Sequence:NP_291059.1Re-query CCDS DB by Nucleotide ID:NM_033581Re-query CCDS DB by Protein ID:NP_291059Link to BLAST:NP_291059.1

Chromosomal Locations for CCDS 29192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37806548 37808977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2805 nt):
ATGGTCGCAGAGGCCCGGAGCAGCGGACTGGTAAGCCCCTGGAGAACGGTGGGAGTTTTGCTTCTGCTAG
CTGCCTTAACCGAGGCTTCCACCATCATTCACTATGAGATCCTGGAGGAGAGAGAGAGGGGGTTCCCCGT
GGGTAACGTGGTCACGGATCTTGGTTTGGATCTCGGCAGTCTGTCGGCCCGCCGGCTCCGGGTGGTGTCC
GGAGCTAGCCGTAGGTTCTTTGAGGTGAACTGGGAGACTGGAGAGATGTTCGTCAACGATCGACTGGACC
GAGAGGAGCTGTGCGGGACGCTGCCCTCCTGCACTGTAACTCTGGAGTTGGTGGTAGAGAACCCGCTGGA
GCTGTTCAGCGCGGAAGTGGTGGTCCAGGACATCAACGACAACAATCCCTCTTTCCCCACCGGGGAAATG
AAATTGGAGATTAGCGAGGCCTTGGCGCCGGGGACGCGCTTTCCGCTCGAGAGCGCGCACGATCCCGATG
TGGGGAGCAACTCTTTACAAACCTATGAGCTGAGCCACAATGAGTACTTTGCGCTCCGCGTGCAGACTCG
AGAAGACGGCACGAAATATGCGGAGCTGGTCCTGGAGCGCGCCCTAGATTGGGAACGGGAGCCAAGTGTC
CAGTTGGTACTGACCGCGCTGGATGGAGGAACCCCAGCTCGCTCCGCCACCCTTCCAATTCGTATCACAG
TGCTGGACGCGAATGACAATGCGCCTGCCTTCAATCAGTCTTTGTATCGGGCGCGCGTCCGGGAGGATGC
ACCCCCAGGCACGCGCGTCGCCCAGGTTCTTGCAACTGACCTGGATGAGGGCCTCAACGGAGAAATCGTT
TACTCCTTCGGCAGCCACAATCGTGCTGGGGTGCGGGAACTATTCGCTTTAGACCTCGTAACCGGGGTGC
TGACAATCAAGGGTCGCCTGGACTTCGAAGACACCAAACTCCATGAGATTTACATCCAGGCCAAAGACAA
AGGTGCCAATCCCGAAGGAGCGCATTGCAAAGTACTTGTAGAGGTTGTAGACGTAAATGACAATGCCCCG
GAAATCACAGTCACCTCTGTATACAGCCCTGTCCCTGAGGATGCTCCTCTGGGGACTGTCATTGCTTTGC
TCAGTGTGACTGATCTGGATGCTGGAGAGAACGGGTTGGTGACCTGCGAGGTTCCACCCGGTCTCCCCTT
TAGCCTGACTTCTTCCCTCAAGAATTACTTCACTTTGAAAACCAGTGCAGCCCTGGATCGTGAGACCATG
CCAGAATACAATCTCAGCATCACAGCTCGAGACTCGGGAATCCCCTCTCTCTCAGCTCTTACAACAGTGA
AGGTCCAAGTGTCCGACATCAACGACAATCCTCCTCAGTCGTCCCAATCCTCCTACGACGTTTATGTTGA
GGAAAATAACCTACCCGGCGTTCCTATATTAAACCTAAGTGTCTGGGACCCCGACGCCCCGCCCAATGCC
CGCCTTTCCTTCTTTCTCTTGGAACCAGGAGCGGAAACTGGGCTCGTGAGTCGCTATTTCACAATAAATC
GTGACAATGGAGTCTTGACTACCTTAGTACCCCTGGACTATGAGGATCAGAGAGAGTTCCAACTAACAGC
TCATATAAACGACGGAGGTACCCCAGTCTTAGCCACCAACATCAGCGTGAACGTATTTGTTACTGACCGC
AATGACAACGCCCCCCAGGTCCTGTATCCCCGGCCTGGCCAGAGTTCGGTGGAGATGCTGCCTCGAGGTA
CAGCTGCGGGCCACGTGGTCTCACGGGTGGTAGGCTGGGACGCAGATGCAGGGCACAATGCTTGGCTCTC
CTACAGCCTCTTGGGAGCCCCCAACCAGAGCCTTTTTGCCGTGGGGCTTCACACGGGTCAGATCAGCACT
GCCCGCCCAATCCAGGACACAGATTCACCAAGGCAGATTCTCACAGTCTTGATCTCAGACAGTGGAGAAC
CTTTGCTCTCCACCACCGCCACCCTGACTGTGTCAGTAACTGAGGAGTCTCCGGAAGCCCGGGCCGAGTT
CCCTTCTGGCTCAGCTCCCCGAGAACAGAACAAAAATCTCACCTTTTATCTACTTCTTTCTCTAATCTTG
GTCTCTGTGGGATTCGCAGTCACAGTGTTGGGAGTGATCATATTCAAAGTTTACAAGTGGAAGCGGTCTA
GGGACCTCTACCGAGCTCCAGTGAGCTCCCTGTACCGAACCCCAGGGCCCTCCTTGCACGCAGACGCGGT
GCGAGGAGGCCTAATGCCACCGCACCTGTACCATCAGGTGTACCTCACCACGGACTCTCGCCGCAGCGAC
CCACTGCTGAAGAAGCCTGGTGCTGCCAGCCCACTGGCCAGCCGCCAGAACACGCTGCGAAGTTGTGATC
CTGTGTTCTATAGACAGGTGTTGGGTGCAGAGAGCGCCCCCCCTGGACAGCAAGCCCCGCCCAACACTGA
CTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGG
CCCAACAACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATG
GGAGCTCTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCT
GCAGCACGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCT
GGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGA
AGTAA

Translation (934 aa):
MVAEARSSGLVSPWRTVGVLLLLAALTEASTIIHYEILEERERGFPVGNVVTDLGLDLGSLSARRLRVVS
GASRRFFEVNWETGEMFVNDRLDREELCGTLPSCTVTLELVVENPLELFSAEVVVQDINDNNPSFPTGEM
KLEISEALAPGTRFPLESAHDPDVGSNSLQTYELSHNEYFALRVQTREDGTKYAELVLERALDWEREPSV
QLVLTALDGGTPARSATLPIRITVLDANDNAPAFNQSLYRARVREDAPPGTRVAQVLATDLDEGLNGEIV
YSFGSHNRAGVRELFALDLVTGVLTIKGRLDFEDTKLHEIYIQAKDKGANPEGAHCKVLVEVVDVNDNAP
EITVTSVYSPVPEDAPLGTVIALLSVTDLDAGENGLVTCEVPPGLPFSLTSSLKNYFTLKTSAALDRETM
PEYNLSITARDSGIPSLSALTTVKVQVSDINDNPPQSSQSSYDVYVEENNLPGVPILNLSVWDPDAPPNA
RLSFFLLEPGAETGLVSRYFTINRDNGVLTTLVPLDYEDQREFQLTAHINDGGTPVLATNISVNVFVTDR
NDNAPQVLYPRPGQSSVEMLPRGTAAGHVVSRVVGWDADAGHNAWLSYSLLGAPNQSLFAVGLHTGQIST
ARPIQDTDSPRQILTVLISDSGEPLLSTTATLTVSVTEESPEARAEFPSGSAPREQNKNLTFYLLLSLIL
VSVGFAVTVLGVIIFKVYKWKRSRDLYRAPVSSLYRTPGPSLHADAVRGGLMPPHLYHQVYLTTDSRRSD
PLLKKPGAASPLASRQNTLRSCDPVFYRQVLGAESAPPGQQAPPNTDWRFSQAQRPGTSGSQNGDETGTW
PNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAA
GKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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