NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79626.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79626.1 Public Mus musculus 18 Pcdhgb2 23 108 98 CCDS HistoryNCBI Gene:93700Re-query CCDS DB by CCDS ID:79626.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79626.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000195112.1 ENSMUSP00000141449.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195112.1Link to Ensembl Protein Viewer:ENSMUSP00000141449.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195112Re-query CCDS DB by Protein ID:ENSMUSP00000141449
Original member Current member NCBI NM_033575.4 NP_291053.1 Accepted alive Link to Nucleotide Sequence:NM_033575.4Link to Protein Sequence:NP_291053.1Re-query CCDS DB by Nucleotide ID:NM_033575Re-query CCDS DB by Protein ID:NP_291053Link to BLAST:NP_291053.1

Chromosomal Locations for CCDS 79626.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37689958 37692369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2787 nt):
ATGAGGAGGGGCTCTGGGAGCGGTCCGGCCTGGTGGCTGCAGGTACTGTCGCCTTTCCTGTTGCTTTTGT
TCCACGGAGCTCTCGCGGATCAGATCCGCTACTCCATTCCCGAGGAGCTGGCCAAGAACTCGATAGTAGG
AAACCTCGCAAGGGATCTGGGGCTCAGTGTCCAGAATCTGCCCACCCGGAAGCTAAGGGTCAGCGCAGAG
AAGGATTATTTTACTGTAAATCCAGAGAGTGGGGACTTACTTGTGGGTGACAGAATAGACAGAGAGCAGG
TTTGCGGGAAGCAGCCTCAGTGTGTTTTGGAGTTCGATATTGTCGCTGAGAAGCCCTTAAATATTTTCCA
CGTAGCTGTAATTCTTCAGGATGTGAACGACAACGCTCCTCTATTCAAACAGAGTGAGGTTGATTTAAAC
ATTGGAGAGTCCACCAGACCAGGTAAAGCATTTCCATTGGATCCAGCCCTCGATTTAGATGCTGGTTCTA
ATTCTCTGCAAAAATACTATCTCACTGACAATGAATACTTTGAAGTCACGGAGAAAGAGACCCCAGATGG
ACGTAAATATCCTGAGTTGATTCTAAAACGTTTTCTGGACAGAGAAGAGCATAATTTTCACCAACTGGTC
CTCACGGCTGTGGATGGGGGAGATCCTCCCCGAAGTGGCACCACCCAGATCCGAATCCAAGTCACAGACA
TCAATGATAACCCGCCAATGTTCAGCCAGGATGTGTTCAGTGTCACCCTTCGGGAGGATGTACCACCAGG
CTTCTCCGTGCTTCAGGTGACAGCCACCGACCAGGACGAGGGTGTCAATGCAGAAATCACCTACGCTTTT
CACAATGTGGATGAACAAGTGGAACGGATTTTTAACTTAGACAAGAGAACAGGAGAAATCACGACAAAGG
ATAATTTGGATTTCGAGACAGCTAAGAGTTACACCCTGAATGTAGAAGCAAAAGATCCCGGAGACCTAGC
ATCCCATTGTAGTATCCAAGTGAAAATTCTGGATGAGAATGATTGTGTACCGGAAGTAATTGTGACGTCA
GTATTTACCCCCCTACCAGAAGATTCTCCACTAGGAACAGTCATCGCCTTGATAAAAACCAGAGACAGAG
ACTCTGGAGAAAATGGAGACGTCTACTGCCATGTGTTGGGAAATGAAGGGTTTGTATTGAAATCTTCTTC
GAAGAATTATTACAAACTAGTGACAGACAGAACTCTAGACCGGGAGGCGATACCGGAATACAACGTCACC
ATTGTAGCTGCCGATAGGGGTAAGCCCCCGCTCTCCTCTAACGTAATCATCACTCTCCATATCTCAGATG
TCAACGACAATGCACCGGTTTTTCACCAGGCCTCCTACTTGGTCCATGTGGCTGAGAACAACCCACCTGG
AACCTCCATTGCTCAAGTCAGTGCTTCTGACCCGGATTTGGGATCCAATGGCCTCATTTCCTACTCCATC
ATAGCCAGCGACCTAGAGCCAAGGGCACTATCGTCCTTCGTGTCCGTGAACCAGGACAGTGGAGTGGTGT
TCGCGCAGCGCGCCTTCGACCACGAGCAGCTGCGCTCCTTCCAGCTGACACTACAGGCGCGGGACCACGG
ATCGCCCACACTCAGTGCCAATGTGAGCATGCGTGTGCTGGTGGGCGACCGCAACGACAACGCGCCACGC
GTGCTGTATCCCACACTTGAGCCCGACGGCTCTGCGCTCTTCGACATGGTGCCGCGCGCTGCCGAGCCCG
GATACCTGGTCACCAAGGTGGTGGCTGTGGATGCAGACTCCGGACACAATGCCTGGCTATCTTACCACGT
GCTGCAGGCCAGCGATCCCGGGCTCTTCAGCCTGGGACTGCGCACAGGCGAGGTGCGCACAGCGCGTGCC
CTGGGAGACAGGGACTCAGCGCGGCAGCGCCTTCTGGTCGCTGTGCGTGATGGTGGACAGCCACCGCTCT
CCGCTACAGCCACGCTGCACCTCATCTTCGCTGACAGCCTGCAGGAGGTCCTGCCAGACCTCAGCGATGA
CCCTCTACCATCTGACCCTCAGAGTGAGCTTCAGTTTTACCTGGTGGTGGCCTTGGCCCTGATCTCAGTA
CTCTTCCTCCTGTCGGTGATTCTGGCTATTGCCCTGCGTCTGAGACACTCCTCCAGATCAGCTGCCTGGG
GCTGCTTTCAACCTGGCCTCAGCTCTAACCTTGCGACTGGAGTTCTCCCCAATTACAATGAGGGGACTTT
ACCTTATTCCTACAATGTGTGTATTGCCTCACAGTCAGCTAAGACAGAGTTTAATTTTCTCAATGTGACT
CCGGAAGTTGCTCCTCAGGACCTCCTCTGCGGCGACGACTCTTGGGTACCAGGTACTCTTGGAGACACTG
ACGTTCCGTTTGTCTCGGATTCTATCTCAAAGCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGC
CCAGAGACCCGGCACGAGCGGATCCCAAAATGGTGATGAAACTGGCACCTGGCCCAACAACCAGTTTGAT
ACAGAGATGCTGCAAGCCATGATCTTGGCCTCTGCCAGCGAAGCTGCTGATGGGAGCTCTACCCTGGGAG
GGGGCGCTGGCACCATGGGTCTGAGCGCTCGATACGGACCCCAGTTTACCCTGCAGCACGTGCCTGACTA
CCGCCAGAACGTGTACATCCCTGGCAGCAATGCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAG
GCTCCAGCAGGTGGTAATGGCAACAAGAAGAAATCGGGCAAGAAAGAGAAGAAGTAA

Translation (928 aa):
MRRGSGSGPAWWLQVLSPFLLLLFHGALADQIRYSIPEELAKNSIVGNLARDLGLSVQNLPTRKLRVSAE
KDYFTVNPESGDLLVGDRIDREQVCGKQPQCVLEFDIVAEKPLNIFHVAVILQDVNDNAPLFKQSEVDLN
IGESTRPGKAFPLDPALDLDAGSNSLQKYYLTDNEYFEVTEKETPDGRKYPELILKRFLDREEHNFHQLV
LTAVDGGDPPRSGTTQIRIQVTDINDNPPMFSQDVFSVTLREDVPPGFSVLQVTATDQDEGVNAEITYAF
HNVDEQVERIFNLDKRTGEITTKDNLDFETAKSYTLNVEAKDPGDLASHCSIQVKILDENDCVPEVIVTS
VFTPLPEDSPLGTVIALIKTRDRDSGENGDVYCHVLGNEGFVLKSSSKNYYKLVTDRTLDREAIPEYNVT
IVAADRGKPPLSSNVIITLHISDVNDNAPVFHQASYLVHVAENNPPGTSIAQVSASDPDLGSNGLISYSI
IASDLEPRALSSFVSVNQDSGVVFAQRAFDHEQLRSFQLTLQARDHGSPTLSANVSMRVLVGDRNDNAPR
VLYPTLEPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASDPGLFSLGLRTGEVRTARA
LGDRDSARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDDPLPSDPQSELQFYLVVALALISV
LFLLSVILAIALRLRHSSRSAAWGCFQPGLSSNLATGVLPNYNEGTLPYSYNVCIASQSAKTEFNFLNVT
PEVAPQDLLCGDDSWVPGTLGDTDVPFVSDSISKQAPPNTDWRFSQAQRPGTSGSQNGDETGTWPNNQFD
TEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGKRDGK
APAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH