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Report for CCDS15003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15003.1 Public Mus musculus 1 Klf7 23 108 98 CCDS HistoryNCBI Gene:93691Re-query CCDS DB by CCDS ID:15003.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15003.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114086.7 ENSMUSP00000109720.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114086.7Link to Ensembl Protein Viewer:ENSMUSP00000109720.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114086Re-query CCDS DB by Protein ID:ENSMUSP00000109720
Original member Current member NCBI NM_033563.2 NP_291041.2 Accepted alive Link to Nucleotide Sequence:NM_033563.2Link to Protein Sequence:NP_291041.2Re-query CCDS DB by Nucleotide ID:NM_033563Re-query CCDS DB by Protein ID:NP_291041Link to BLAST:NP_291041.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291041.2 301 Q99JB0 301 100% 0 0

Chromosomal Locations for CCDS 15003.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 64035713 64035764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64042314 64042437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64078707 64079334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 64120900 64121001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGACGTGTTGGCTAGTTATAGTATATTCCAGGAGCTACAACTTGTCCACGACACCGGCTACTTCTCAG
CTTTGCCATCCCTGGAGGAGACCTGGCAGCAGACATGCCTTGAGTTGGAACGCTACCTCCAGACAGAACC
CCGGCGGATCTCGGAGACCTTTGGTGAGGACTTGGACTGCTTCCTCCACGCTTCTCCTCCCCCATGCATT
GAGGAGAGCTTCCGGCGCCTAGACCCCTTGCTGCTCCCAGTGGAAGCCACCATCTGCGAGAAGAGCTCCG
CAGTGGACATTTTGCTCTCTCGGGACAAGTTGCTATCTGAGACCTGCCTCAGCCTCCAGCCAACCAGCTC
TTCTCTAGACAGCTACACAGCCGTCAACCAGGCCCAGCTCAACGCAGTGACCTCATTAACGCCGCCCTCA
TCCCCTGAGCTCAGCCGCCATCTGGTCAAAACCTCACAGACTCTCTCAGCCGTGGATGGCACAGTGACGT
TGAAACTGGTGGCCAAGAAGGCTTCCCTCAGCTCGGTGAAGGTGGGAGGGGTGGCGGCGGCGGCAGCCGT
GACACCAGCTGGAGCAGTTAAGAGTGGACAGAGCGACAGTGAGCAAGGAGGGGGAGGGGCTGACACATGC
CCTGAAAACAAGAAGAGGGTCCATCGCTGTCAGTTTAACGGGTGCCGGAAAGTTTATACAAAAAGCTCCC
ACTTAAAGGCCCACCAGAGGACTCACACAGGTGAGAAGCCTTACAAGTGCTCATGGGAAGGATGCGAGTG
GCGTTTTGCACGGAGCGATGAGCTCACAAGGCACTACAGGAAACACACAGGTGCAAAGCCCTTTAAGTGT
AACCACTGCGACAGGTGTTTCTCCAGGTCTGACCATCTTGCGCTCCATATGAAGAGACATATCTAA

Translation (301 aa):
MDVLASYSIFQELQLVHDTGYFSALPSLEETWQQTCLELERYLQTEPRRISETFGEDLDCFLHASPPPCI
EESFRRLDPLLLPVEATICEKSSAVDILLSRDKLLSETCLSLQPTSSSLDSYTAVNQAQLNAVTSLTPPS
SPELSRHLVKTSQTLSAVDGTVTLKLVAKKASLSSVKVGGVAAAAAVTPAGAVKSGQSDSEQGGGGADTC
PENKKRVHRCQFNGCRKVYTKSSHLKAHQRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKC
NHCDRCFSRSDHLALHMKRHI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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