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Report for CCDS2480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2480.1 Public Homo sapiens 2 GPR55 24 110 108 CCDS HistoryNCBI Gene:9290Re-query CCDS DB by CCDS ID:2480.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2480.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392039.2 ENSP00000375893.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392039.2Link to Ensembl Protein Viewer:ENSP00000375893.2Re-query CCDS DB by Nucleotide ID:ENST00000392039Re-query CCDS DB by Protein ID:ENSP00000375893
Original member Current member EBI ENST00000392040.5 ENSP00000375894.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392040.5Link to Ensembl Protein Viewer:ENSP00000375894.1Re-query CCDS DB by Nucleotide ID:ENST00000392040Re-query CCDS DB by Protein ID:ENSP00000375894
Original member Current member EBI ENST00000444078.5 ENSP00000410267.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444078.5Link to Ensembl Protein Viewer:ENSP00000410267.1Re-query CCDS DB by Nucleotide ID:ENST00000444078Re-query CCDS DB by Protein ID:ENSP00000410267
Original member Current member EBI ENST00000622008.4 ENSP00000482381.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622008.4Link to Ensembl Protein Viewer:ENSP00000482381.1Re-query CCDS DB by Nucleotide ID:ENST00000622008Re-query CCDS DB by Protein ID:ENSP00000482381
Original member Current member EBI ENST00000650999.1 ENSP00000498258.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000650999.1Link to Ensembl Protein Viewer:ENSP00000498258.1Re-query CCDS DB by Nucleotide ID:ENST00000650999Re-query CCDS DB by Protein ID:ENSP00000498258
Original member Current member NCBI NM_005683.4 NP_005674.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005683.4Link to Protein Sequence:NP_005674.2Re-query CCDS DB by Nucleotide ID:NM_005683Re-query CCDS DB by Protein ID:NP_005674Link to BLAST:NP_005674.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005674.2 319 Q9Y2T6 319 100% 0 0

Chromosomal Locations for CCDS 2480.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 230910003 230910962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGAGTCAGCAAAACACCAGTGGGGACTGCCTGTTTGACGGTGTCAACGAGCTGATGAAAACCCTACAGT
TTGCAGTCCACATCCCCACCTTCGTCCTGGGCCTGCTCCTCAACCTGCTGGCCATCCATGGCTTCAGCAC
CTTCCTTAAGAACAGGTGGCCCGATTATGCTGCCACCTCCATCTACATGATCAACCTGGCAGTCTTTGAC
CTGCTGCTGGTGCTCTCCCTCCCATTCAAGATGGTCCTGTCCCAGGTACAGTCCCCCTTCCCGTCCCTGT
GCACCCTGGTGGAGTGCCTTTACTTCGTCAGCATGTACGGAAGCGTCTTCACCATCTGCTTCATCAGCAT
GGACCGGTTCTTGGCCATCCGTTACCCGCTACTGGTGAGCCACCTCCGGTCCCCCAGGAAGATCTTTGGG
ATCTGCTGCACCATCTGGGTCCTGGTGTGGACCGGAAGCATCCCTATCTACAGTTTCCATGGGAAAGTGG
AAAAATACATGTGCTTCCACAACATGTCTGATGATACCTGGAGCGCCAAGGTCTTCTTCCCGCTGGAGGT
GTTTGGCTTCCTCCTTCCCATGGGCATCATGGGCTTCTGCTGCTCCAGGAGCATCCACATCCTGCTGGGC
CGCCGAGACCACACCCAGGACTGGGTGCAGCAGAAAGCCTGCATCTACAGCATCGCAGCCAGCCTGGCTG
TCTTCGTGGTCTCCTTCCTCCCAGTCCACCTGGGGTTCTTCCTGCAGTTCCTGGTGAGAAACAGCTTTAT
CGTAGAGTGCAGAGCCAAGCAGAGCATCAGCTTCTTCTTGCAATTGTCCATGTGTTTCTCCAACGTCAAC
TGCTGCCTGGATGTTTTCTGCTACTACTTTGTCATCAAAGAATTCCGCATGAACATCAGGGCCCACCGGC
CTTCCAGGGTCCAGCTGGTCCTGCAGGACACCACGATCTCCCGGGGCTAA

Translation (319 aa):
MSQQNTSGDCLFDGVNELMKTLQFAVHIPTFVLGLLLNLLAIHGFSTFLKNRWPDYAATSIYMINLAVFD
LLLVLSLPFKMVLSQVQSPFPSLCTLVECLYFVSMYGSVFTICFISMDRFLAIRYPLLVSHLRSPRKIFG
ICCTIWVLVWTGSIPIYSFHGKVEKYMCFHNMSDDTWSAKVFFPLEVFGFLLPMGIMGFCCSRSIHILLG
RRDHTQDWVQQKACIYSIAASLAVFVVSFLPVHLGFFLQFLVRNSFIVECRAKQSISFFLQLSMCFSNVN
CCLDVFCYYFVIKEFRMNIRAHRPSRVQLVLQDTTISRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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