NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24785.1 Public Mus musculus 11 Srebf1 23 108 98 CCDS HistoryNCBI Gene:20787Re-query CCDS DB by CCDS ID:24785.1Re-query CCDS DB by GeneID:20787See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020846.7 ENSMUSP00000020846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020846.7Link to Ensembl Protein Viewer:ENSMUSP00000020846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000020846Re-query CCDS DB by Protein ID:ENSMUSP00000020846
Original member Current member NCBI NM_011480.4 NP_035610.1 Accepted alive Link to Nucleotide Sequence:NM_011480.4Link to Protein Sequence:NP_035610.1Re-query CCDS DB by Nucleotide ID:NM_011480Re-query CCDS DB by Protein ID:NP_035610Link to BLAST:NP_035610.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035610.1 1134 Q9WTN3-1 1134 100% 0 0

Chromosomal Locations for CCDS 24785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60199922 60200151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60200426 60200537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60200635 60200835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60201246 60201411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60201580 60201712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60201796 60201905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60202159 60202261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60202762 60202930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60203099 60203265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60203346 60203607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60203799 60203977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60204071 60204266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60204387 60204601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60205122 60205233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60205856 60206077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60206173 60206310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60206395 60206573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60206838 60207257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60220453 60220543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGGACGAGCTGGCCTTCGGTGAGGCGGCTCTGGAACAGACACTGGCCGAGATGTGCGAACTGGACACAG
CGGTTTTGAACGACATCGAAGACATGCTCCAGCTCATCAACAACCAAGACAGTGACTTCCCGGGCCTGTT
TGACGCCCCCTATGCTGGGGGTGAGACAGGGGACACAGGCCCCAGCAGCCCAGGTGCCAACTCTCCTGAG
AGCTTCTCTTCTGCTTCTCTGGCCTCCTCTCTGGAAGCCTTCCTGGGAGGACCCAAGGTGACACCTGCAC
CCTTGTCCCCTCCACCATCGGCACCCGCTGCTTTAAAGATGTACCCGTCCGTGTCCCCCTTTTCCCCTGG
GCCTGGGATCAAAGAGGAGCCAGTGCCACTCACCATCCTACAGCCTGCAGCGCCACAGCCGTCACCGGGG
ACCCTCCTGCCTCCGAGCTTCCCCGCACCACCCGTACAGCTCAGCCCTGCGCCCGTGCTGGGTTACTCGA
GCCTGCCTTCAGGCTTCTCAGGGACCCTTCCAGGAAACACTCAGCAGCCACCATCTAGCCTGCCGCTGGC
CCCTGCACCAGGAGTCTTGCCCACCCCTGCCCTGCACACCCAGGTCCAAAGCTTGGCCTCCCAGCAGCCG
CTGCCAGCCTCAGCAGCCCCTAGAACAAACACTGTGACCTCACAGGTCCAGCAGGTCCCAGTTGTACTGC
AGCCACACTTCATCAAGGCAGACTCACTGCTGCTGACAGCTGTGAAGACAGATGCAGGAGCCACCGTGAA
GACTGCAGGCATCAGCACCCTGGCTCCTGGCACAGCCGTGCAGGCAGGTCCCCTGCAGACCCTGGTGAGT
GGAGGGACCATCTTGGCCACAGTACCTTTGGTTGTGGACACAGACAAACTGCCCATCCACCGACTCGCAG
CTGGCAGCAAGGCCCTAGGCTCAGCTCAGAGCCGTGGTGAGAAGCGCACAGCCCACAATGCCATTGAGAA
GCGCTACCGGTCTTCTATCAATGACAAGATTGTGGAGCTCAAAGACCTGGTGGTGGGCACTGAAGCAAAG
CTGAATAAATCTGCTGTCTTGCGCAAGGCCATCGACTACATCCGCTTCTTGCAGCACAGCAACCAGAAGC
TCAAGCAGGAGAACCTGACCCTACGAAGTGCACACAAAAGCAAATCACTGAAGGACCTGGTGTCAGCTTG
TGGCAGTGGAGGAGGCACAGATGTGTCTATGGAGGGCATGAAACCCGAAGTGGTGGAGACGCTTACCCCT
CCACCCTCAGACGCCGGCTCACCCTCCCAGAGTAGCCCCTTGTCTTTTGGCAGCAGAGCTAGCAGCAGTG
GTGGTAGTGACTCTGAGCCCGACAGTCCAGCCTTTGAGGATAGCCAGGTCAAAGCCCAGCGGCTGCCTTC
ACACAGCCGAGGCATGCTGGACCGCTCCCGCCTGGCCCTGTGTGTACTGGCCTTTCTGTGTCTGACCTGC
AATCCTTTGGCCTCGCTTTTCGGCTGGGGCATTCTCACTCCCTCTGATGCTACGGGTACACACCGTAGTT
CTGGGCGCAGCATGCTGGAGGCAGAGAGCAGAGATGGCTCTAATTGGACCCAGTGGTTGCTGCCACCCCT
AGTCTGGCTGGCCAATGGACTACTAGTGTTGGCCTGCTTGGCTCTTCTCTTTGTCTATGGGGAACCTGTG
ACTAGGCCACACTCTGGCCCGGCTGTACACTTCTGGAGACATCGCAAACAAGCTGACCTGGATTTGGCCC
GGGGAGATTTCCCCCAGGCTGCTCAACAGCTGTGGCTGGCCCTGCAAGCGCTGGGCCGGCCCCTGCCCAC
CTCAAACCTGGATCTGGCCTGCAGTCTGCTTTGGAACCTCATCCGCCACCTGCTCCAGCGTCTCTGGGTG
GGCCGCTGGCTGGCAGGCCAGGCCGGGGGCCTGCTGAGGGACCGTGGGCTGAGGAAGGATGCCCGTGCCA
GTGCCCGGGATGCGGCTGTTGTCTACCATAAGCTGCACCAGCTGCATGCCATGGGCAAGTACACAGGAGG
ACATCTTGCTGCTTCTAACCTGGCACTAAGTGCCCTCAACCTGGCTGAGTGCGCAGGAGATGCTATCTCC
ATGGCAACACTGGCAGAGATCTATGTGGCAGCGGCCCTGAGGGTCAAAACCAGCCTCCCAAGAGCCCTGC
ACTTCTTGACACGTTTCTTCCTGAGCAGCGCCCGCCAGGCCTGCCTAGCACAGAGCGGCTCGGTGCCTCT
TGCCATGCAGTGGCTCTGCCACCCTGTAGGTCACCGTTTCTTTGTGGACGGGGACTGGGCCGTGCACGGT
GCCCCCCCGGAGAGCCTGTACAGCGTGGCTGGGAACCCAGTGGATCCGCTGGCCCAGGTGACCCGGCTAT
TCCGTGAACATCTCCTAGAGCGAGCGTTGAACTGTATTGCTCAGCCCAGCCCAGGGGCAGCTGACGGAGA
CAGGGAGTTCTCAGATGCCCTTGGATATCTGCAGTTGCTAAATAGCTGTTCTGATGCTGCCGGGGCTCCT
GCTTGCAGTTTCTCTGTCAGCTCCAGCATGGCTGCCACCACTGGCCCAGACCCAGTGGCCAAGTGGTGGG
CCTCACTGACAGCTGTGGTGATCCACTGGCTGAGGCGGGATGAAGAGGCAGCTGAGCGCTTGTACCCACT
GGTAGAGCATATCCCCCAGGTGCTGCAGGACACTGAGAGACCCCTGCCCAGGGCAGCTCTGTACTCCTTC
AAGGCTGCCCGGGCTCTGCTGGACCACAGAAAGGTGGAATCTAGCCCAGCCAGCCTGGCCATCTGTGAGA
AGGCCAGTGGGTACCTGCGGGACAGCTTAGCCTCTACACCAACTGGCAGTTCCATTGACAAGGCCATGCA
GCTGCTCCTGTGTGATCTACTTCTTGTGGCCCGTACCAGTCTGTGGCAGCGGCAGCAGTCACCAGCTTCA
GTCCAGGTAGCTCACGGTACCAGCAATGGACCCCAGGCCTCTGCTCTGGAGCTGCGTGGTTTCCAACATG
ACCTGAGCAGCCTGCGGCGGTTGGCACAGAGCTTCCGGCCTGCTATGAGGAGGGTATTCCTACATGAGGC
CACAGCTCGGCTGATGGCAGGAGCAAGTCCTGCCCGGACACACCAGCTCCTGGATCGCAGTCTGAGGAGG
AGGGCAGGTTCCAGTGGCAAAGGAGGCACTACAGCTGAGCTGGAGCCACGGCCCACATGGCGGGAGCACA
CCGAGGCCCTGCTGTTGGCATCCTGCTATCTGCCCCCTGCCTTCCTGTCGGCTCCTGGGCAGCGAATGAG
CATGCTGGCCGAGGCGGCACGCACCGTAGAGAAGCTTGGCGATCACCGGCTACTGCTGGACTGCCAGCAG
ATGCTCCTGCGCCTGGGCGGCGGAACCACCGTCACTTCCAGCTAG

Translation (1134 aa):
MDELAFGEAALEQTLAEMCELDTAVLNDIEDMLQLINNQDSDFPGLFDAPYAGGETGDTGPSSPGANSPE
SFSSASLASSLEAFLGGPKVTPAPLSPPPSAPAALKMYPSVSPFSPGPGIKEEPVPLTILQPAAPQPSPG
TLLPPSFPAPPVQLSPAPVLGYSSLPSGFSGTLPGNTQQPPSSLPLAPAPGVLPTPALHTQVQSLASQQP
LPASAAPRTNTVTSQVQQVPVVLQPHFIKADSLLLTAVKTDAGATVKTAGISTLAPGTAVQAGPLQTLVS
GGTILATVPLVVDTDKLPIHRLAAGSKALGSAQSRGEKRTAHNAIEKRYRSSINDKIVELKDLVVGTEAK
LNKSAVLRKAIDYIRFLQHSNQKLKQENLTLRSAHKSKSLKDLVSACGSGGGTDVSMEGMKPEVVETLTP
PPSDAGSPSQSSPLSFGSRASSSGGSDSEPDSPAFEDSQVKAQRLPSHSRGMLDRSRLALCVLAFLCLTC
NPLASLFGWGILTPSDATGTHRSSGRSMLEAESRDGSNWTQWLLPPLVWLANGLLVLACLALLFVYGEPV
TRPHSGPAVHFWRHRKQADLDLARGDFPQAAQQLWLALQALGRPLPTSNLDLACSLLWNLIRHLLQRLWV
GRWLAGQAGGLLRDRGLRKDARASARDAAVVYHKLHQLHAMGKYTGGHLAASNLALSALNLAECAGDAIS
MATLAEIYVAAALRVKTSLPRALHFLTRFFLSSARQACLAQSGSVPLAMQWLCHPVGHRFFVDGDWAVHG
APPESLYSVAGNPVDPLAQVTRLFREHLLERALNCIAQPSPGAADGDREFSDALGYLQLLNSCSDAAGAP
ACSFSVSSSMAATTGPDPVAKWWASLTAVVIHWLRRDEEAAERLYPLVEHIPQVLQDTERPLPRAALYSF
KAARALLDHRKVESSPASLAICEKASGYLRDSLASTPTGSSIDKAMQLLLCDLLLVARTSLWQRQQSPAS
VQVAHGTSNGPQASALELRGFQHDLSSLRRLAQSFRPAMRRVFLHEATARLMAGASPARTHQLLDRSLRR
RAGSSGKGGTTAELEPRPTWREHTEALLLASCYLPPAFLSAPGQRMSMLAEAARTVEKLGDHRLLLDCQQ
MLLRLGGGTTVTSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH