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Report for CCDS11708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11708.1 Public Homo sapiens 17 OTOP2 24 110 108 CCDS HistoryNCBI Gene:92736Re-query CCDS DB by CCDS ID:11708.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331427.9 ENSP00000332528.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331427.9Link to Ensembl Protein Viewer:ENSP00000332528.4Re-query CCDS DB by Nucleotide ID:ENST00000331427Re-query CCDS DB by Protein ID:ENSP00000332528
Original member Current member NCBI NM_178160.3 NP_835454.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178160.3Link to Protein Sequence:NP_835454.1Re-query CCDS DB by Nucleotide ID:NM_178160Re-query CCDS DB by Protein ID:NP_835454Link to BLAST:NP_835454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835454.1 562 Q7RTS6 562 100% 0 0

Chromosomal Locations for CCDS 11708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 74924633 74924945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74925556 74925692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74927223 74927281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74927665 74927798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74930279 74931153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 74933375 74933545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGTCCGAGGAGCTGGCCCAGGGCCCCAAGGAGAGCCCCCCGGCGCCGCGTGCGGGCCCCAGGGAGGTGT
GGAAGAAGGGTGGCCGCCTGCTGTCGGTGCTGCTGGCGGTGAACGTGCTGCTCCTCGCCTGCACGCTCAT
CAGCGGCGGAGCCTTCAACAAGGTGGCCGTGTACGACACCGACGTGTTCGCGCTGCTCACTGCGATGATG
CTGCTGGCAACGCTCTGGATCCTCTTCTACCTCCTCCGAACCGTGCGCTGCCCCTGCGCGGTACCCTACC
GGGACGCGCACGCTGGCCCCATCTGGCTCCGAGGTGGGCTGGTGCTGTTTGGAATCTGCACCCTCATCAT
GGATGTCTTCAAGACCGGCTACTACTCCAGTTTCTTTGAGTGCCAGTCAGCCATCAAGATCCTGCACCCC
CTCATCCAGGCTGTGTTTGTCATCATCCAGACCTACTTTCTCTGGGTCTCTGCTAAAGACTGCGTTCACG
TCCACCTGGATCTGACCTGGTGTGGTCTCATGTTCACACTCACCACCAACCTGGCCATCTGGATGGCGGC
CGTGGTGGATGAATCTGTGCACCAATCCCACTCCTACAGCAGTTCTCACAGCAACGCCAGCCACGCCCGT
CTCATCTCTGACCAGCATGCAGACAACCCGGTCGGAGGAGACTCCTGCCTCTGCAGCACGGCCGTCTGCC
AGATCTTCCAGCAGGGGTACTTCTACCTATATCCCTTCAACATCGAGTACAGCCTCTTCGCCTCCACCAT
GCTGTATGTCATGTGGAAGAATGTGGGTAGATTCCTGGCCTCCACCCCTGGCCACAGCCACACCCCAACC
CCTGTCAGCCTCTTCCGGGAGACCTTTTTTGCTGGCCCGGTTCTGGGCCTGCTGCTCTTCGTGGTGGGGC
TGGCTGTCTTCATCATCTACGAGGTTCAAGTGAGCGGGGACGGGAGCCGCACCAGGCAGGCCCTGGTCAT
CTACTACAGCTTCAACATTGTCTGCTTGGGACTCACCACCTTGGTCAGCCTGAGCGGCTCCATCATCTAC
CGTTTTGACCGCCGGGCCATGGACCACCATAAGAACCCCACGCGCACTCTGGACGTGGCCCTGCTGATGG
GTGCCGCCCTGGGTCAGTACGCCATCTCTTACTACTCCATCGTGGCTGTGGTGGCGGGCACACCCCAGGA
CCTGCTGGCAGGGCTCAACCTCACCCATGCACTGCTCATGATCGCCCAGCACACCTTCCAGAACATGTTT
ATCATCGAGAGCCTTCACCGAGGACCGCCCGGGGCTGAGCCTCACAGTACCCACCCCAAGGAGCCCTGCC
AAGACCTCACCTTCACCAACCTGGATGCCCTCCACACGTTGTCCGCCTGCCCACCCAACCCCGGGCTGGT
TAGCCCCAGCCCTTCAGACCAGCGGGAAGCAGTGGCCATCGTCTCAACCCCCAGAAGCCAGTGGAGACGC
CAGTGCCTAAAAGACATTTCTCTGTTTCTCCTACTCTGCAATGTCATTCTGTGGATCATGCCTGCCTTCG
GGGCCCGCCCTCATTTCAGCAACACAGTGGAGGTGGATTTCTACGGCTACTCCCTCTGGGCGGTCATCGT
CAACATCTGCCTCCCTTTCGGCATCTTCTACCGCATGCACGCTGTGTCCAGCCTGCTGGAGGTCTACGTG
CTGTCCTGA

Translation (562 aa):
MSEELAQGPKESPPAPRAGPREVWKKGGRLLSVLLAVNVLLLACTLISGGAFNKVAVYDTDVFALLTAMM
LLATLWILFYLLRTVRCPCAVPYRDAHAGPIWLRGGLVLFGICTLIMDVFKTGYYSSFFECQSAIKILHP
LIQAVFVIIQTYFLWVSAKDCVHVHLDLTWCGLMFTLTTNLAIWMAAVVDESVHQSHSYSSSHSNASHAR
LISDQHADNPVGGDSCLCSTAVCQIFQQGYFYLYPFNIEYSLFASTMLYVMWKNVGRFLASTPGHSHTPT
PVSLFRETFFAGPVLGLLLFVVGLAVFIIYEVQVSGDGSRTRQALVIYYSFNIVCLGLTTLVSLSGSIIY
RFDRRAMDHHKNPTRTLDVALLMGAALGQYAISYYSIVAVVAGTPQDLLAGLNLTHALLMIAQHTFQNMF
IIESLHRGPPGAEPHSTHPKEPCQDLTFTNLDALHTLSACPPNPGLVSPSPSDQREAVAIVSTPRSQWRR
QCLKDISLFLLLCNVILWIMPAFGARPHFSNTVEVDFYGYSLWAVIVNICLPFGIFYRMHAVSSLLEVYV
LS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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