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Report for CCDS29465.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29465.1 Public Mus musculus 19 Ctsw 23 108 98 CCDS HistoryNCBI Gene:13041Re-query CCDS DB by CCDS ID:29465.1Re-query CCDS DB by GeneID:13041See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29465.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025844.5 ENSMUSP00000025844.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025844.5Link to Ensembl Protein Viewer:ENSMUSP00000025844.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025844Re-query CCDS DB by Protein ID:ENSMUSP00000025844
Original member Current member NCBI NM_009985.5 NP_034115.2 Accepted alive Link to Nucleotide Sequence:NM_009985.5Link to Protein Sequence:NP_034115.2Re-query CCDS DB by Nucleotide ID:NM_009985Re-query CCDS DB by Protein ID:NP_034115Link to BLAST:NP_034115.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034115.2 371 P56203 371 100% 0 0

Chromosomal Locations for CCDS 29465.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5465341 5465451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5465530 5465730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5465805 5465869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5466020 5466145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5466231 5466311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5466389 5466485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5466581 5466735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5467023 5467136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5467838 5467922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5468403 5468483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1116 nt):
ATGACACTGACTGCCCACCTCTCCTACTTTCTGGTCCTGTTGTTAGCGGGCCAAGGCCTCAGTGACTCCC
TCCTCACCAAGGATGCAGGTCCCCGGCCACTGGAGCTGAAGGAAGTCTTCAAGCTGTTCCAGATCCGGTT
CAACCGGAGTTACTGGAACCCAGCAGAGTACACTCGCCGTCTGAGCATCTTTGCCCACAATCTGGCTCAG
GCTCAAAGGCTACAGCAAGAAGACTTGGGTACAGCTGAGTTTGGAGAGACTCCATTCAGTGACCTCACAG
AGGAGGAGTTTGGCCAGTTATACGGGCAGGAGAGGTCACCAGAAAGGACCCCCAACATGACCAAAAAGGT
AGAGTCTAACACGTGGGGGGAATCTGTGCCCCGCACCTGTGACTGGCGTAAAGCAAAGAACATCATCTCG
TCGGTCAAGAACCAGGGAAGCTGCAAATGCTGCTGGGCCATGGCAGCTGCCGACAACATCCAGGCTCTGT
GGCGCATCAAACACCAGCAGTTTGTGGACGTCTCTGTGCAGGAGCTGCTGGACTGCGAACGCTGTGGAAA
TGGTTGCAATGGTGGCTTCGTGTGGGACGCATATCTAACTGTCCTCAACAACAGTGGCCTGGCCAGTGAA
AAGGATTATCCATTCCAGGGGGACAGAAAGCCTCACAGATGCCTAGCCAAGAAGTACAAGAAGGTGGCCT
GGATCCAGGATTTCACCATGTTGTCCAATAATGAGCAGGCAATTGCCCACTACCTGGCCGTGCATGGACC
TATCACCGTGACCATCAACATGAAACTACTCCAGCATTACCAGAAGGGTGTCATCAAGGCTACACCCAGC
TCCTGTGACCCTCGGCAAGTGGACCACTCTGTCTTGCTGGTGGGCTTTGGCAAGGAGAAAGAGGGCATGC
AGACAGGGACAGTCTTGTCCCATTCTCGAAAACGTCGCCACTCCTCCCCATACTGGATCCTGAAGAACTC
CTGGGGAGCTCACTGGGGCGAGAAGGGTTACTTCAGGCTGTATCGGGGAAACAACACCTGTGGAGTCACC
AAGTATCCCTTCACAGCTCAAGTGGACTCACCAGTAAAGAAGGCACGGACCTCTTGTCCTCCCTGA

Translation (371 aa):
MTLTAHLSYFLVLLLAGQGLSDSLLTKDAGPRPLELKEVFKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQ
AQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIIS
SVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGNGCNGGFVWDAYLTVLNNSGLASE
KDYPFQGDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINMKLLQHYQKGVIKATPS
SCDPRQVDHSVLLVGFGKEKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGVT
KYPFTAQVDSPVKKARTSCPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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