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Report for CCDS1272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1272.1 Public Homo sapiens 1 TBX19 24 110 108 CCDS HistoryNCBI Gene:9095Re-query CCDS DB by CCDS ID:1272.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1272.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367821.8 ENSP00000356795.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367821.8Link to Ensembl Protein Viewer:ENSP00000356795.3Re-query CCDS DB by Nucleotide ID:ENST00000367821Re-query CCDS DB by Protein ID:ENSP00000356795
Original member Current member NCBI NM_005149.3 NP_005140.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005149.3Link to Protein Sequence:NP_005140.1Re-query CCDS DB by Nucleotide ID:NM_005149Re-query CCDS DB by Protein ID:NP_005140Link to BLAST:NP_005140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005140.1 448 O60806 448 100% 0 0

Chromosomal Locations for CCDS 1272.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 168281091 168281293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168291160 168291424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168293144 168293278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168297724 168297785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168300422 168300483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168305008 168305196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168308742 168308877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 168312708 168313002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1347 nt):
ATGGCCATGAGTGAGCTGGGCACTCGGAAGCCCAGCGATGGCACTGTTTCTCATCTGCTCAATGTGGTGG
AGAGTGAGCTTCAGGCAGGGAGGGAAAAAGGCGACCCTACGGAGAAGCAACTTCAGATCATCCTGGAGGA
TGCACCTCTCTGGCAGAGATTCAAGGAAGTCACTAATGAGATGATTGTGACCAAGAATGGCAGACGGATG
TTTCCAGTCCTAAAGATTAGTGTCACAGGGTTGGACCCCAATGCCATGTACTCCCTCCTGCTGGACTTTG
TCCCTACGGACAGTCACCGCTGGAAGTACGTCAACGGGGAATGGGTGCCCGCTGGCAAGCCAGAGGTCTC
CAGCCACAGCTGCGTCTACATTCACCCGGACTCCCCCAACTTTGGGGCCCACTGGATGAAAGCTCCCATC
TCCTTCAGCAAAGTGAAGCTGACCAACAAGCTCAATGGAGGCGGGCAGATAATGTTGAATTCTCTGCATA
AATATGAACCCCAGGTTCACATAGTGCGTGTTGGAAGTGCCCATCGAATGGTAACAAACTGCTCCTTCCC
TGAAACCCAGTTCATAGCCGTGACTGCCTATCAGAATGAGGAGATAACGGCTCTCAAAATCAAGTACAAT
CCTTTTGCCAAAGCCTTCTTGGATGCCAAGGAAAGAAATCACCTAAGAGACGTACCGGAGGCTATCTCTG
AGAGCCAGCATGTGACCTATTCTCACTTGGGAGGCTGGATCTTTTCCAATCCAGATGGAGTGTGCACAGC
AGGAAACTCCAATTACCAGTATGCCGCTCCTCTGCCTCTGCCTGCTCCCCACACCCACCATGGCTGTGAG
CACTATTCGGGTCTCCGAGGACACCGGCAGGCTCCCTACCCTTCTGCGTACATGCACAGAAACCATTCTC
CCTCAGTGAATTTGATAGAAAGCTCAAGCAATAATCTGCAAGTTTTCTCGGGACCTGACAGCTGGACTTC
CTTATCCTCCACACCCCATGCCAGCATCCTGTCTGTACCCCACACCAACGGACCAATCAATCCAGGGCCC
AGCCCCTACCCGTGCCTGTGGACCATCAGCAATGGTGCCGGAGGCCCCAGTGGGCCAGGCCCGGAGGTGC
ACGCCAGCACCCCAGGAGCATTTCTCCTCGGAAACCCAGCTGTGACTTCACCCCCTTCTGTGCTCTCCAC
CCAAGCACCCACTTCGGCTGGTGTGGAGGTTCTGGGGGAGCCCTCGCTAACCAGCATTGCTGTGTCCACC
TGGACAGCAGTGGCCTCGCATCCCTTCGCGGGCTGGGGTGGCCCAGGAGCGGGTGGGCACCATTCTCCTT
CCTCACTGGATGGTTAA

Translation (448 aa):
MAMSELGTRKPSDGTVSHLLNVVESELQAGREKGDPTEKQLQIILEDAPLWQRFKEVTNEMIVTKNGRRM
FPVLKISVTGLDPNAMYSLLLDFVPTDSHRWKYVNGEWVPAGKPEVSSHSCVYIHPDSPNFGAHWMKAPI
SFSKVKLTNKLNGGGQIMLNSLHKYEPQVHIVRVGSAHRMVTNCSFPETQFIAVTAYQNEEITALKIKYN
PFAKAFLDAKERNHLRDVPEAISESQHVTYSHLGGWIFSNPDGVCTAGNSNYQYAAPLPLPAPHTHHGCE
HYSGLRGHRQAPYPSAYMHRNHSPSVNLIESSSNNLQVFSGPDSWTSLSSTPHASILSVPHTNGPINPGP
SPYPCLWTISNGAGGPSGPGPEVHASTPGAFLLGNPAVTSPPSVLSTQAPTSAGVEVLGEPSLTSIAVST
WTAVASHPFAGWGGPGAGGHHSPSSLDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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