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Report for CCDS4892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4892.1 Public Homo sapiens 6 SLC22A7 24 110 108 CCDS HistoryNCBI Gene:10864Re-query CCDS DB by CCDS ID:4892.1Re-query CCDS DB by GeneID:10864See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372589.7 ENSP00000361670.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372589.7Link to Ensembl Protein Viewer:ENSP00000361670.3Re-query CCDS DB by Nucleotide ID:ENST00000372589Re-query CCDS DB by Protein ID:ENSP00000361670
Original member Current member NCBI NM_006672.3 NP_006663.2 Accepted alive Link to Nucleotide Sequence:NM_006672.3Link to Protein Sequence:NP_006663.2Re-query CCDS DB by Nucleotide ID:NM_006672Re-query CCDS DB by Protein ID:NP_006663Link to BLAST:NP_006663.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006663.2 546 Q9Y694-2 546 100% 0 0

Chromosomal Locations for CCDS 4892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43298359 43298751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43299390 43299493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43299627 43299781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43299898 43300066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43301135 43301258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43301583 43301692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43302200 43302414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43302655 43302763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43304038 43304244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 43304671 43304725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGGGCTTTGAGGAGCTGCTGGAGCAGGTGGGCGGCTTTGGGCCCTTCCAACTGCGGAATGTGGCACTGC
TGGCCCTGCCCCGAGTGCTGCTACCACTGCACTTCCTCCTGCCCATCTTCCTGGCTGCCGTGCCTGCCCA
CCGATGTGCCCTGCCGGGTGCCCCTGCCAACTTCAGCCATCAGGATGTGTGGCTGGAGGCCCATCTTCCC
CGGGAGCCTGATGGCACGCTCAGCTCCTGCCTCCGCTTTGCCTATCCCCAGGCTCTCCCCAACACCACGT
TGGGGGAAGAAAGGCAGAGCCGTGGGGAGCTGGAGGATGAACCTGCCACAGTGCCCTGCTCTCAGGGCTG
GGAGTACGACCACTCAGAATTCTCCTCTACCATTGCAACTGAGTGGGATCTGGTGTGTGAGCAGAAAGGT
CTGAACAGAGCTGCGTCCACTTTCTTCTTCGCCGGTGTGCTGGTGGGGGCTGTGGCCTTTGGATATCTGT
CCGACAGGTTTGGGCGGCGGCGTCTGCTGCTGGTAGCCTACGTGAGTACCCTGGTGCTGGGCCTGGCATC
TGCAGCCTCCGTCAGCTATGTAATGTTTGCCATCACCCGCACCCTTACTGGCTCAGCCCTGGCTGGTTTT
ACCATCATCGTGATGCCACTGGAGCTGGAGTGGCTGGATGTGGAGCACCGCACCGTGGCTGGAGTCCTGA
GCAGCACCTTCTGGACAGGGGGCGTGATGCTGCTGGCACTGGTTGGGTACCTGATACGGGACTGGCGATG
GCTTCTGCTAGCTGTCACCCTGCCTTGTGCCCCAGGCATCCTCAGCCTCTGGTGGGTGCCTGAGTCTGCA
CGCTGGCTTCTGACCCAAGGCCATGTGAAAGAGGCCCACAGGTACTTGCTCCACTGTGCCAGGCTCAATG
GGCGGCCAGTGTGTGAGGACAGCTTCAGCCAGGAGGCTGTGAGCAAAGTGGCCGCCGGGGAACGGGTGGT
CCGAAGACCTTCATACCTAGACCTGTTCCGCACACCACGGCTCCGACACATCTCACTGTGCTGCGTGGTG
GTGTGGTTCGGAGTGAACTTCTCCTATTACGGCCTGAGTCTGGATGTGTCGGGGCTGGGGCTGAACGTGT
ACCAGACACAGCTGTTGTTCGGGGCTGTGGAACTGCCCTCCAAGCTGCTGGTCTACTTGTCGGTGCGCTA
CGCAGGACGCCGCCTCACGCAAGCCGGGACACTGCTGGGCACGGCCCTGGCGTTCGGCACTAGACTGCTA
GTGTCCTCCGATATGAAGTCCTGGAGCACTGTCCTGGCAGTGATGGGGAAAGCTTTTTCTGAAGCTGCCT
TCACCACTGCCTACCTGTTCACTTCAGAGTTGTACCCTACGGTGCTCAGACAGACAGGGATGGGGCTGAC
TGCACTGGTGGGCCGGCTGGGGGGCTCTTTGGCCCCACTGGCGGCCTTGCTGGATGGAGTGTGGCTGTCA
CTGCCCAAGCTTACTTATGGGGGGATCGCCCTGCTGGCTGCCGGCACCGCCCTCCTGCTGCCAGAGACGA
GGCAGGCACAGCTGCCAGAGACCATCCAGGACGTGGAGAGAAAGAGTGCCCCAACCAGTCTTCAGGAGGA
AGAGATGCCCATGAAGCAGGTCCAGAACTAA

Translation (546 aa):
MGFEELLEQVGGFGPFQLRNVALLALPRVLLPLHFLLPIFLAAVPAHRCALPGAPANFSHQDVWLEAHLP
REPDGTLSSCLRFAYPQALPNTTLGEERQSRGELEDEPATVPCSQGWEYDHSEFSSTIATEWDLVCEQKG
LNRAASTFFFAGVLVGAVAFGYLSDRFGRRRLLLVAYVSTLVLGLASAASVSYVMFAITRTLTGSALAGF
TIIVMPLELEWLDVEHRTVAGVLSSTFWTGGVMLLALVGYLIRDWRWLLLAVTLPCAPGILSLWWVPESA
RWLLTQGHVKEAHRYLLHCARLNGRPVCEDSFSQEAVSKVAAGERVVRRPSYLDLFRTPRLRHISLCCVV
VWFGVNFSYYGLSLDVSGLGLNVYQTQLLFGAVELPSKLLVYLSVRYAGRRLTQAGTLLGTALAFGTRLL
VSSDMKSWSTVLAVMGKAFSEAAFTTAYLFTSELYPTVLRQTGMGLTALVGRLGGSLAPLAALLDGVWLS
LPKLTYGGIALLAAGTALLLPETRQAQLPETIQDVERKSAPTSLQEEEMPMKQVQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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