NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS24050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24050.1 Public Mus musculus 10 Apba3 23 108 98 CCDS HistoryNCBI Gene:57267Re-query CCDS DB by CCDS ID:24050.1Re-query CCDS DB by GeneID:57267See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24050.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057798.8 ENSMUSP00000050995.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057798.8Link to Ensembl Protein Viewer:ENSMUSP00000050995.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000057798Re-query CCDS DB by Protein ID:ENSMUSP00000050995
Original member Current member EBI ENSMUST00000220297.1 ENSMUSP00000151985.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220297.1Link to Ensembl Protein Viewer:ENSMUSP00000151985.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220297Re-query CCDS DB by Protein ID:ENSMUSP00000151985
Original member NCBI NM_018758.2 NP_061228.1 Updated not alive Link to Nucleotide Sequence:NM_018758.2Link to Protein Sequence:NP_061228.1Re-query CCDS DB by Nucleotide ID:NM_018758Re-query CCDS DB by Protein ID:NP_061228
Current member NCBI NM_018758.3 NP_061228.1 Accepted alive Link to Nucleotide Sequence:NM_018758.3Link to Protein Sequence:NP_061228.1Re-query CCDS DB by Nucleotide ID:NM_018758Re-query CCDS DB by Protein ID:NP_061228Link to BLAST:NP_061228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061228.1 571 O88888 571 100% 0 0

Chromosomal Locations for CCDS 24050.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81268895 81269461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81269545 81269584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81270968 81271113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81271196 81271282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81271365 81271526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81271662 81271832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81272185 81272397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81272584 81272703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81272822 81272959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81273049 81273120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGGAGTTCCTGCCAGGACCCCAGCATCCCCCAGGGCCCCCAACCATGGACTTGGAGGAGCCCAAAGGCC
CCGAGGTGCCCTCTGAGAACCACCCCTCTAACACCCAGTCGGCCTTAGGGCCTGGAGGCCCTGTCACCCT
GAGTGAGATGGAGCTGGACACATCCAGTGTGCAGGAGCTGGTTCAGCAGCTAGAAGCTCTACCCAGCGAC
CTGGGTGGCCCATTCCCAGATGGAGCCCCCTGTCCCCTGCACATTGCTACCGGCCAAGGACTTGCCACCC
AGGAGAACCCAGATGCTGGTGGGCTCTTGTCGGCCGAGGCAGGCGGGGACGACCTTCTGGGTCTGCTGAG
GGATGAGGCCTCTTCGCCTGCCCAATCTGTCCCCCAAGATCCTGCACAGACTGCACCCCGCCTTCTGCAG
CCGCCAGAGGACCCTGATGGGGACCCGGGATGGATGGAAGGGGCATCAGCAGAGCCAGCAGACAGCAGGA
GCTCCAGCAGTTCCCCGGAGCCCTGGCTGGAGACAGCACCCCTGGTGACACAGCAGGAACCACCTGTGGG
TACCCAGAGCCGGGAGACCCTGGCCTCGTGCCCTGCCGTCACCGAGGTCCCAGGTCCCTGTGGGCCGGAG
GAGCTCATGGATGGTGTCATCTTCGGGGCGAAATACCTGGGCTCCACCCAGCTGCTGTCAGAGCGCAGCC
CGGCGCCCAGCACACGCATGGGGCAGGCGCAGGAGGCCATGGACCGCGTCAAGGCCCCTGAAGGCGAGAC
CCAGCCCATGGTGGAAGTGGACATCTTTATCTCCACCAAGCGTGTCAAAGTGTTGGCTGCTGACTCCCAG
GATGCCCTGATGGACCATGCCCTGCAGACCATCTCCTACATCGCAGACATTGGGCCTGTACTGGTCTTGA
TGGCCCGGAGGCGGCTGGCCAGGAGGACAACTCCCCAGGACCGCCAGCGGCGACTCTACAAGATGCTGTG
CCATGTCTTCCACTCAGAGGATGCCCAGCTCATAGCACAAGCCATCGGCCAGGCCTTCAGCATCGCCTAC
AGCCAGTTCCTACAGGAGAACAGGATCGACCCCAGCCAGGTGGGCACGCAGCCCTCAACCGCTGCCAGCC
ACCCGCACAACGGCGACCTGGACCACTTCTGCAACAGCCAGAACTGTAGGGAGGTTTGCATCCAGAAGCG
GCCAGGTGAAGGCCTGGGCGTCGCGCTAGTTGAATCAGGCTGGGGCTCGCTACTGCCCACTGCGGTCATT
GCCAACCTGCTCCATGGGGGCCCTGCCGAGCGCTGCGGGGCCCTGAGCATAGGGGACCGCGTCACTGCCA
TCAATGGAACCAGCCTGGTGGGGCTGTCGCTGGCTGCCTGCCAGGCTGCGGTGCGCGAGGTGCGGCGACT
TTCATCCGTGACGCTGAGTATTATCCACTGCCCACCGGTCACCACGGCCGTCATCCGCCGGCCCCACGTG
CGCGAGCAGCTGGGCTTCTGTGTGGAGGATGGAATCATTTGTAGCCTGCTGCGTGGGGGCGCTGCTGAGC
GTGGTGGAGTCCGCGTTGGACACCGCATCATTGAGGTCAACGGGCAGAGCGTGGTGGCTATGCCCCATGC
GCGCATCATCCAGCTGCTCACAGAGACAAGAGAAATCCACATCAAGACCATGCCAGCTGCCACCTACCGA
CTGCTCACGGGACAGGAACAACCAGTATACCTATGA

Translation (571 aa):
MEFLPGPQHPPGPPTMDLEEPKGPEVPSENHPSNTQSALGPGGPVTLSEMELDTSSVQELVQQLEALPSD
LGGPFPDGAPCPLHIATGQGLATQENPDAGGLLSAEAGGDDLLGLLRDEASSPAQSVPQDPAQTAPRLLQ
PPEDPDGDPGWMEGASAEPADSRSSSSSPEPWLETAPLVTQQEPPVGTQSRETLASCPAVTEVPGPCGPE
ELMDGVIFGAKYLGSTQLLSERSPAPSTRMGQAQEAMDRVKAPEGETQPMVEVDIFISTKRVKVLAADSQ
DALMDHALQTISYIADIGPVLVLMARRRLARRTTPQDRQRRLYKMLCHVFHSEDAQLIAQAIGQAFSIAY
SQFLQENRIDPSQVGTQPSTAASHPHNGDLDHFCNSQNCREVCIQKRPGEGLGVALVESGWGSLLPTAVI
ANLLHGGPAERCGALSIGDRVTAINGTSLVGLSLAACQAAVREVRRLSSVTLSIIHCPPVTTAVIRRPHV
REQLGFCVEDGIICSLLRGGAAERGGVRVGHRIIEVNGQSVVAMPHARIIQLLTETREIHIKTMPAATYR
LLTGQEQPVYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH