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Report for CCDS80379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80379.1 Public Mus musculus 5 Cabp1 23 108 98 CCDS HistoryNCBI Gene:29867Re-query CCDS DB by CCDS ID:80379.1Re-query CCDS DB by GeneID:29867See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112113.7 ENSMUSP00000107741.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112113.7Link to Ensembl Protein Viewer:ENSMUSP00000107741.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112113Re-query CCDS DB by Protein ID:ENSMUSP00000107741
Original member Current member NCBI NM_001310712.1 NP_001297641.1 Accepted alive Link to Nucleotide Sequence:NM_001310712.1Link to Protein Sequence:NP_001297641.1Re-query CCDS DB by Nucleotide ID:NM_001310712Re-query CCDS DB by Protein ID:NP_001297641Link to BLAST:NP_001297641.1

Chromosomal Locations for CCDS 80379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115169123 115169148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115172759 115172906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115173115 115173224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115175379 115175522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115176240 115176270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115193654 115194247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGGCGGCGGCGACGGGGCCGCATTTAAGCGGCCAGGGGACGGCGCCCGCCTGCAGCGCGTCCTCGGGC
TTGGCTCCCGCCGGGCGCCCCGCTCTCTGCCCTCCGGGGGCCCCGCACCACCCCCGCCGGGCCATGCGAG
CGCGGGCCCCGCCGCGATGAGCTCGCACATTGCCAAGAGCGAGTCCAAGACGTCGCTGCTCAAGGCGGCG
GCGGCGAGCGGGGGCAGCCGGGCTCCCCGCCACAGCTCTGCGCGGGACCCCGGGCTGCGTGGCCGCCGGC
TGCCCGGTCCCTGCCCCGGCTCGCCTCCACCGTGCGGGGACCCCAGCTCGCGGAGGCCCCTGTGCCGGCC
CGTGCCGCGGGACGAGGGCGCGCGCGGGAGCCGGCGTGGGCTGCCCCAGGCGCACTGCAGGCCCCGGGAG
ACGCTACCGCCGGCCCGCGGGCGCGATGGGGAGGAACGGGGGCTGGCGCCAGCGCTCGGTCTACGGGGCT
CCCTGCGATCGCGGGGTCGCGGGGACCCGGCTCCTGCTGGCACCCCCGAGGCGGACCCGTTCCTCCACCG
GCTGCGCCCCATGCTCAGCTCCGCCTTCGGCCAGGACAGATCGTTACGACCAGAGGAGATTGAAGAGCTC
CGAGAGGCCTTCCGAGAATTTGACAAAGACAAGGATGGTTACATCAACTGCCGGGACCTGGGGAACTGCA
TGCGCACCATGGGCTACATGCCCACCGAGATGGAGCTCATTGAGCTGTCTCAGCAGATCAACATGAACCT
GGGTGGCCACGTGGATTTTGATGACTTTGTGGAACTGATGGGCCCTAAACTCCTGGCGGAGACGGCAGAT
ATGATTGGTGTAAAGGAGCTGAGAGACGCCTTTCGGGAGTTTGATACCAACGGTGACGGGGAGATAAGTA
CGAGCGAGCTTCGAGAGGCCATGAGGAAGCTCCTGGGTCATCAGGTGGGACACCGGGACATAGAGGAAAT
TATCCGAGACGTGGACCTCAATGGAGATGGACGAGTGGACTTTGAAGAGTTTGTCCGGATGATGTCTCGC
TGA

Translation (350 aa):
MGGGDGAAFKRPGDGARLQRVLGLGSRRAPRSLPSGGPAPPPPGHASAGPAAMSSHIAKSESKTSLLKAA
AASGGSRAPRHSSARDPGLRGRRLPGPCPGSPPPCGDPSSRRPLCRPVPRDEGARGSRRGLPQAHCRPRE
TLPPARGRDGEERGLAPALGLRGSLRSRGRGDPAPAGTPEADPFLHRLRPMLSSAFGQDRSLRPEEIEEL
REAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETAD
MIGVKELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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