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Report for CCDS81188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81188.1 Public Mus musculus X Cypt3 23 108 98 CCDS HistoryNCBI Gene:69361Re-query CCDS DB by CCDS ID:81188.1Re-query CCDS DB by GeneID:69361See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112573.7 ENSMUSP00000108192.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112573.7Link to Ensembl Protein Viewer:ENSMUSP00000108192.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112573Re-query CCDS DB by Protein ID:ENSMUSP00000108192
Original member Current member NCBI NM_001310716.1 NP_001297645.1 Accepted alive Link to Nucleotide Sequence:NM_001310716.1Link to Protein Sequence:NP_001297645.1Re-query CCDS DB by Nucleotide ID:NM_001310716Re-query CCDS DB by Protein ID:NP_001297645Link to BLAST:NP_001297645.1

Chromosomal Locations for CCDS 81188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 153558613 153558882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 153559045 153559299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGCTCAGGTGGCCAAGAAAGTCCACGGGTCTAGAGCTGCGGCAGCAGCAGCAGCCGCCGCTGCCAAAG
CCAAAAGATCGAAGCCTAAGACCGCCGCCAAAAGATTCAAGCTTAATAAGAAGCGAAACCCTAGATCTAA
GCTTCCCAAGAGATCTCATCGTTCCTTAATTCGTTCTCTTTTTCAGTCTCGTTCCTGTGGTTGCTGTCGT
TGTTGCTGTGGTTTTTGCTGTTATCGTTCTCGTCCTTCTCGTAGCAGAATTACATTTAAGTTCTTTCAGA
TTACGAAGAAGGGGGAACAATCACTTAGAAGGAGAATTAGGAGACGAATCAAGAGTGCTACTGAACTTCG
ATTGATGCGGAGCCAACTGGAGCTGATCGAACCGGAACCGACTATGGCTTTGGAGCCAAGTGAGATTACA
GTGGCATTGTTCTCTCATGAGAATGCCAATGTGTCTGAGCCGGAGGAAGTTCCACCATGCATTGACAGTG
ACCAGGTTCCGAATGGAGACTTGGCCAGCTCCTAG

Translation (174 aa):
MAQVAKKVHGSRAAAAAAAAAAKAKRSKPKTAAKRFKLNKKRNPRSKLPKRSHRSLIRSLFQSRSCGCCR
CCCGFCCYRSRPSRSRITFKFFQITKKGEQSLRRRIRRRIKSATELRLMRSQLELIEPEPTMALEPSEIT
VALFSHENANVSEPEEVPPCIDSDQVPNGDLASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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