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Report for CCDS79348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79348.1 Public Mus musculus 14 Cnmd 23 108 98 CCDS HistoryNCBI Gene:16840Re-query CCDS DB by CCDS ID:79348.1Re-query CCDS DB by GeneID:16840See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165835.7 ENSMUSP00000126958.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165835.7Link to Ensembl Protein Viewer:ENSMUSP00000126958.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165835Re-query CCDS DB by Protein ID:ENSMUSP00000126958
Original member NCBI NM_001310655.1 NP_001297584.1 Updated not alive Link to Nucleotide Sequence:NM_001310655.1Link to Protein Sequence:NP_001297584.1Re-query CCDS DB by Nucleotide ID:NM_001310655Re-query CCDS DB by Protein ID:NP_001297584
Current member NCBI NM_001310655.2 NP_001297584.1 Accepted alive Link to Nucleotide Sequence:NM_001310655.2Link to Protein Sequence:NP_001297584.1Re-query CCDS DB by Nucleotide ID:NM_001310655Re-query CCDS DB by Protein ID:NP_001297584Link to BLAST:NP_001297584.1

Chromosomal Locations for CCDS 79348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 79637962 79638177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79641896 79642074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79645363 79645516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79650312 79650422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79656589 79656729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79661395 79661538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79661940 79662011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGACAGAGAACTCAGACAAAGTTCCTATCACCATGGTAGGGCCTGAGGACGTTGAGTTTTGCAGTCCCC
CGGCGTACACCACCGTCACCGTGAAGCCCTCCGGGAGCCCAACACGGCTGCTCAAGGTAGGAGCTGTGGT
CCTCATTTCTGGCGCGGTACTGCTGCTCTTCGGGGCCATCGGGGCCTTCTACTTCTGGAAGGGGAATGAC
AATCACATTTACAATGTTCATTACAGTATGAGTATCAATGGGAAACTACAAGATGGGTCAATGGAAATAG
ATGCTGTGAACAACTTGGAGACCTTTAAAATGGGAAGCGGAGCGGAAGAAGCAATTGAAGTCAACGATTT
TAAAAATGGCATCACTGGGATCCGTTTTGCTGGAGGAGAGAAGTGCTACATCAAAGCACAGGTGAAGGCT
CGCATCCCTGAGGTGGGCACAGTGACCAAGCAGAGCATCTCTGAACTGGAAGGCAAGATCATGCCAGCTA
ACTACGAAGAGAACTCGCTGATTTGGGTGGCCGTGGACCAGCCTGTGAAGGACAGCAGCTTCTTGAGCTC
TAAAATCCTTGAACTCTGTGGCGACCTGCCGATTTTCTGGCTTAAGCCCATGTATCCAAAAGCAAATTTC
GCAGAAATCCAGAGAGAGAGAAGAGAAGTCGTGAGAAACAGTGCTCCCTCTACCACAAGAAGACCACACA
GCGAACCTCGAGGTAACGCAGGCCCTGGAAGACTGAGTAACGGAACCAGACCCAATGTTCAGGACGACGC
AGAACCTTTCAACCCTGACAATCCTTACCACCAGCAGGAAGGAGAAAGCATGACATTTGACCCTAGACTG
GACCATGAAGGGATCTGCTGTATAGAATGCAGGCGGAGCTACACCCACTGCCAGAAGATCTGTGAACCAC
TGGGAGGCTACTATCCATGGCCTTACAATTACCAAGGATGCCGCTCGGCCTGCAGAGTCGTCATGCCATG
CAGCTGGTGGGTGGCCCGCATCTTGGGCATGGTGTAA

Translation (338 aa):
MTENSDKVPITMVGPEDVEFCSPPAYTTVTVKPSGSPTRLLKVGAVVLISGAVLLLFGAIGAFYFWKGND
NHIYNVHYSMSINGKLQDGSMEIDAVNNLETFKMGSGAEEAIEVNDFKNGITGIRFAGGEKCYIKAQVKA
RIPEVGTVTKQSISELEGKIMPANYEENSLIWVAVDQPVKDSSFLSSKILELCGDLPIFWLKPMYPKANF
AEIQRERREVVRNSAPSTTRRPHSEPRGNAGPGRLSNGTRPNVQDDAEPFNPDNPYHQQEGESMTFDPRL
DHEGICCIECRRSYTHCQKICEPLGGYYPWPYNYQGCRSACRVVMPCSWWVARILGMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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