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Report for CCDS3393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3393.1 Public Homo sapiens 4 BLOC1S4 24 110 108 CCDS HistoryNCBI Gene:55330Re-query CCDS DB by CCDS ID:3393.1Re-query CCDS DB by GeneID:55330See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320776.5 ENSP00000318128.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320776.5Link to Ensembl Protein Viewer:ENSP00000318128.3Re-query CCDS DB by Nucleotide ID:ENST00000320776Re-query CCDS DB by Protein ID:ENSP00000318128
Original member Current member NCBI NM_018366.3 NP_060836.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018366.3Link to Protein Sequence:NP_060836.1Re-query CCDS DB by Nucleotide ID:NM_018366Re-query CCDS DB by Protein ID:NP_060836Link to BLAST:NP_060836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060836.1 217 Q9NUP1 217 100% 0 0

Chromosomal Locations for CCDS 3393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 6716210 6716863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGAGGGTAGCTTTTCGGATGGCGGAGCGCTGCCGGAGGGGCTCGCGGAAGAGGCCGAGCCGCAGGGCG
CCGCCTGGAGCGGGGACAGTGGCACTGTTTCCCAGAGCCACAGCAGCGCCTCGGGGCCGTGGGAGGACGA
GGGCGCGGAGGACGGCGCGCCGGGCCGCGACCTGCCGCTGCTTCGCCGCGCCGCTGCGGGCTACGCCGCC
TGCCTGCTGCCCGGGGCCGGGGCGCGGCCCGAGGTCGAGGCCCTGGACGCGAGCCTAGAGGACCTGCTTA
CCAGAGTGGACGAGTTCGTGGGCATGCTGGACATGCTTCGCGGCGACTCGTCCCACGTCGTCAGCGAGGG
CGTGCCGCGCATCCACGCGAAGGCCGCCGAGATGCGGCGCATCTACAGCAGGATCGACCGGCTGGAGGCC
TTCGTGAGGATGGTGGGGGGCCGCGTGGCCAGGATGGAGGAGCAGGTCACCAAGGCCGAGGCCGAGCTGG
GCACCTTCCCCAGGGCGTTCAAGAAGCTCCTGCACACGATGAACGTGCCCTCGCTCTTTAGCAAGTCTGC
TCCCTCGAGGCCACAGCAAGCCGGCTACGAAGCCCCCGTCCTGTTTCGGACCGAAGACTACTTCCCTTGT
TGCAGTGAAAGGCCTCAGCTCTGA

Translation (217 aa):
MEGSFSDGGALPEGLAEEAEPQGAAWSGDSGTVSQSHSSASGPWEDEGAEDGAPGRDLPLLRRAAAGYAA
CLLPGAGARPEVEALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPRIHAKAAEMRRIYSRIDRLEA
FVRMVGGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVPSLFSKSAPSRPQQAGYEAPVLFRTEDYFPC
CSERPQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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