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Report for CCDS2120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2120.1 Public Homo sapiens 2 DDX18 24 110 108 CCDS HistoryNCBI Gene:8886Re-query CCDS DB by CCDS ID:2120.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2120.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263239.7 ENSP00000263239.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263239.7Link to Ensembl Protein Viewer:ENSP00000263239.2Re-query CCDS DB by Nucleotide ID:ENST00000263239Re-query CCDS DB by Protein ID:ENSP00000263239
Original member Current member NCBI NM_006773.4 NP_006764.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006773.4Link to Protein Sequence:NP_006764.3Re-query CCDS DB by Nucleotide ID:NM_006773Re-query CCDS DB by Protein ID:NP_006764Link to BLAST:NP_006764.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006764.3 670 Q9NVP1 670 100% 0 0

Chromosomal Locations for CCDS 2120.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 117814778 117814862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117817444 117817728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117819649 117819792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117821161 117821296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117821650 117821750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117821862 117822061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117822147 117822261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117824569 117824708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117824940 117825101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117825447 117825599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117826269 117826382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117828949 117829005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117829289 117829466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117830582 117830724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGTCACACCTGCCGATGAAACTCCTGCGTAAGAAGATCGAGAAGCGGAACCTCAAATTGCGGCAGCGGA
ACCTAAAGTTTCAGGGGGCCTCAAATCTGACCCTATCGGAAACTCAAAATGGAGATGTATCTGAAGAAAC
AATGGGAAGTAGAAAGGTTAAAAAATCAAAACAAAAGCCCATGAATGTGGGCTTATCAGAAACTCAAAAT
GGAGGCATGTCTCAAGAAGCAGTGGGAAATATAAAAGTTACAAAGTCTCCCCAGAAATCCACTGTATTAA
CCAATGGAGAAGCAGCAATGCAGTCTTCCAATTCAGAATCAAAAAAGAAAAAGAAGAAAAAGAGAAAAAT
GGTGAATGATGCTGAGCCTGATACGAAAAAAGCAAAAACTGAAAACAAAGGGAAATCTGAAGAAGAAAGT
GCCGAGACTACTAAAGAAACAGAAAATAATGTGGAGAAGCCAGATAATGATGAAGATGAGAGTGAGGTGC
CCAGTCTGCCCCTGGGACTGACAGGAGCTTTTGAGGATACTTCGTTTGCTTCTCTATGTAATCTTGTCAA
TGAAAACACTCTGAAGGCAATAAAAGAAATGGGTTTTACAAACATGACTGAAATTCAGCATAAAAGTATC
AGACCACTTCTGGAAGGCAGGGATCTTCTAGCAGCTGCAAAAACAGGCAGTGGTAAAACCCTGGCTTTTC
TCATCCCTGCAGTTGAACTCATTGTTAAGTTAAGGTTCATGCCCAGGAATGGAACAGGAGTCCTTATTCT
CTCACCTACTAGAGAACTAGCCATGCAAACCTTTGGTGTTCTTAAGGAGCTGATGACTCACCACGTGCAT
ACCTATGGCTTGATAATGGGTGGCAGTAACAGATCTGCTGAAGCACAGAAACTTGGTAATGGGATCAACA
TCATTGTGGCCACACCAGGCCGTCTGCTGGACCATATGCAGAATACCCCAGGATTTATGTATAAAAACCT
GCAGTGTCTGGTTATTGATGAAGCTGATCGTATCTTGGATGTGGGGTTTGAAGAGGAATTAAAGCAAATT
ATTAAACTTTTGCCAACACGTAGACAGACTATGCTCTTTTCTGCCACCCAAACTCGAAAAGTTGAAGACC
TGGCAAGGATTTCTCTGAAAAAGGAGCCATTGTATGTTGGCGTTGATGATGATAAAGCGAATGCAACAGT
GGATGGTCTTGAACAGGGATATGTTGTTTGTCCTTCTGAAAAGAGATTCCTTCTGCTCTTTACATTCCTT
AAGAAGAACCGAAAGAAGAAGCTTATGGTCTTCTTTTCATCTTGTATGTCTGTGAAATACCACTATGAGT
TGCTGAACTACATTGATTTGCCCGTCTTGGCCATTCATGGAAAGCAAAAGCAAAATAAGCGTACAACCAC
ATTCTTCCAGTTCTGCAATGCAGATTCGGGAACACTATTGTGTACGGATGTGGCAGCGAGAGGACTAGAC
ATTCCTGAAGTCGACTGGATTGTTCAGTATGACCCTCCGGATGACCCTAAGGAATATATTCATCGTGTGG
GTAGAACAGCCAGAGGCCTAAATGGGAGAGGGCATGCCTTGCTCATTTTGCGCCCAGAAGAATTGGGTTT
TCTTCGCTACTTGAAACAATCCAAGGTTCCATTAAGTGAATTTGACTTTTCCTGGTCTAAAATTTCTGAC
ATTCAGTCTCAGCTTGAGAAATTGATTGAAAAGAATTACTTTCTTCATAAGTCAGCCCAGGAAGCATATA
AGTCATACATACGAGCCTATGATTCCCATTCTCTGAAACAGATCTTTAATGTTAATAACCTAAATTTGCC
TCAGGTTGCTCTGTCATTTGGTTTCAAGGTGCCTCCCTTCGTTGATCTGAACGTCAACAGTAATGAAGGC
AAGCAGAAAAAGCGAGGAGGTGGTGGTGGATTTGGCTACCAGAAAACCAAGAAAGTTGAGAAATCCAAAA
TCTTTAAACACATTAGCAAGAAATCATCTGACAGCAGGCAGTTCTCTCACTGA

Translation (670 aa):
MSHLPMKLLRKKIEKRNLKLRQRNLKFQGASNLTLSETQNGDVSEETMGSRKVKKSKQKPMNVGLSETQN
GGMSQEAVGNIKVTKSPQKSTVLTNGEAAMQSSNSESKKKKKKKRKMVNDAEPDTKKAKTENKGKSEEES
AETTKETENNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSI
RPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH
TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQI
IKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATVDGLEQGYVVCPSEKRFLLLFTFL
KKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFFQFCNADSGTLLCTDVAARGLD
IPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPLSEFDFSWSKISD
IQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFNVNNLNLPQVALSFGFKVPPFVDLNVNSNEG
KQKKRGGGGGFGYQKTKKVEKSKIFKHISKKSSDSRQFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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