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Report for CCDS22242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22242.1 Public Mus musculus 8 Tnks 23 108 98 CCDS HistoryNCBI Gene:21951Re-query CCDS DB by CCDS ID:22242.1Re-query CCDS DB by GeneID:21951See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033929.5 ENSMUSP00000033929.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033929.5Link to Ensembl Protein Viewer:ENSMUSP00000033929.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033929Re-query CCDS DB by Protein ID:ENSMUSP00000033929
Original member Current member NCBI NM_175091.3 NP_780300.2 Accepted alive Link to Nucleotide Sequence:NM_175091.3Link to Protein Sequence:NP_780300.2Re-query CCDS DB by Nucleotide ID:NM_175091Re-query CCDS DB by Protein ID:NP_780300Link to BLAST:NP_780300.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780300.2 1320 Q6PFX9-1 1320 100% 0 0

Chromosomal Locations for CCDS 22242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 34831635 34831721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34834438 34834594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34838384 34838570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34838888 34838993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34839968 34840042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34841753 34841850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34842915 34843035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34847281 34847363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34848582 34848819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34849153 34849341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34851098 34851207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34851614 34851833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34853224 34853389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34855928 34856073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34857454 34857533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34861515 34861686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34867281 34867359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34867694 34867785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34869472 34869593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34873028 34873214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34873603 34873669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34875214 34875308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34889676 34889751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34890504 34890540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34918379 34918474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34940696 34940920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 34965014 34965665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGGCGGCGTCGCGTCGCTCTCAGCATCATCACCACCATCATCAGCAACAGCTCCAGCCCGCCCCAGGGG
CTTCGGCTCCGCCACCGCCACCTCCCCCGCCGCTCAGCCCGGGCTTGGCCCCGGGACCCACCCCTGCCTC
GCCTACGGCCGGCGGCCTGGCGCCCTTCGCCTCCCCGCGGCACGGCCTGGCGCTGCCGGAGGGGGATGGC
AGCCGGGACCCGCCCGACAGGCCGCGATCTCCCGACCCGGTGGACGGCGCCGTCTGCACCGTGGCTGCTC
CGGCCGCGGTCCCGGCAGCTTCCGCCGCCGTCGGGGTCGCTCCCACCCCAGCCGGCGGCGGCGGCGGCGG
CGGGAACAACTCCGCGTCGTCCGCTTCTTCCCCGACTTCGTCTTCGTCTTCCTCCCCGTCCTCCCCTGGC
TCGAGCTTAGCGGAGAGTCCCGAGGCGGCCGGAGTTGGCTCCACGGCAACTTTGGGAGCCGGGGCGGCGG
GCCTCGGCCCGGGGGTCCCAGCCGTGAGTGGGGCCCTGCGGGAGCTGCTCGAGGCCTGTCGGAATGGGGA
CGTGTCCCGGGTGAAGAGGTTGGTGGACGCCGCGAACGTGAATGCCAAGGACATGGCCGGCCGAAAGTCT
TCTCCCCTGCACTTCGCAGCAGGTTTTGGAAGGAAGGATGTTGTAGAACACTTGCTGCAGATGGGTGCTA
ATGTCCACGCCCGTGATGACGGGGGTCTCATCCCACTTCATAATGCCTGCTCTTTCGGCCATGCTGAGGT
TGTGAGTCTGTTACTGTGTCAAGGAGCAGATCCGAATGCCAGAGATAACTGGAACTATACACCACTGCAT
GAAGCTGCCATTAAAGGGAAAATTGATGTCTGTATTGTGCTGCTGCAGCACGGAGCCGATCCAAACATCC
GGAACACCGATGGGAAATCAGCTCTGGACCTGGCAGATCCTTCAGCAAAAGCTGTCCTCACAGGTGAATA
CAAAAAAGACGAACTCCTAGAAGCTGCTAGGAGTGGTAATGAAGAAAAACTAATGGCTTTACTGACTCCT
CTAAATGTGAATTGCCATGCAAGTGATGGACGAAAGTCTACTCCGTTACACCTGGCAGCAGGCTACAACA
GAGTTCGGATAGTTCAGCTGCTTCTACAGCATGGTGCTGATGTCCACGCGAAAGACAAAGGTGGACTTGT
ACCTCTTCATAATGCATGCTCATACGGACACTATGAGGTCACAGAACTGCTGCTAAAGCATGGAGCTTGT
GTCAACGCTATGGATCTGTGGCAGTTCACACCGCTGCATGAAGCTGCTTCAAAGAACCGGGTAGAAGTCT
GTTCTCTGTTACTTAGTCACGGTGCCGATCCAACCTTGGTCAATTGCCATGGCAAAAGTGCTGTCGACAT
GGCTCCAACTCCTGAGCTCCGGGAAAGACTGACATATGAATTTAAAGGCCATTCTTTACTCCAAGCCGCC
AGAGAAGCAGACCTGGCCAAAGTTAAAAAAACGCTTGCTTTGGAAATCATTAACTTCAAGCAGCCACAGT
CTCATGAAACTGCATTGCACTGTGCTGTGGCCTCCTTGCATCCCAAACGAAAGCAGGTGGCAGAGCTGTT
ACTGAGGAAGGGAGCCAACGTCAACGAAAAGAACAAGGATTTCATGACCCCTCTGCATGTTGCAGCTGAA
AGAGCTCATAATGATGTCATGGAAGTTCTGCATAAGCACGGAGCAAAGATGAATGCACTGGATAGTCTTG
GTCAGACTGCTTTGCACAGAGCTGCCTTAGCGGGCCACCTGCAGACCTGCCGCCTCCTGCTGAGTTATGG
CTCTGATCCTTCCATCATCTCCCTGCAAGGCTTCACGGCAGCGCAGATGGGGAATGAAGCAGTGCAACAG
ATTCTGAGCGAGAGTACTCCTATGCGCACTTCGGACGTGGACTATCGTCTCTTAGAGGCATCGAAAGCTG
GTGACTTGGAAACTGTGAAGCAACTCTGCAGCCCGCAGAATGTGAACTGCAGAGACCTGGAGGGCCGGCA
CTCTACACCCTTACACTTCGCTGCAGGCTATAACCGTGTGTCTGTCGTTGAGTACCTTCTACATCATGGA
GCTGATGTCCATGCCAAAGACAAAGGTGGCTTGGTTCCCCTTCACAATGCCTGCTCCTATGGACACTATG
AGGTCGCCGAGCTCTTGGTGAGGCACGGGGCTTCAGTCAATGTGGCCGACCTGTGGAAATTCACCCCTCT
CCATGAAGCGGCAGCCAAGGGAAAATACGAAATCTGCAAACTCCTTCTAAAACATGGAGCAGATCCAACT
AAGAAGAACAGAGATGGAAATACACCCCTAGATCTGGTCAAAGAAGGAGACACGGATATTCAGGACCTGC
TGAGGGGCGATGCTGCCCTGTTGGATGCTGCCAAGAAGGGCTGCCTAGCCAGAGTGCAGAAGCTTTGTAC
TCCAGAGAATATCAACTGCCGAGACACCCAGGGCAGAAATTCAACCCCTCTCCACCTGGCAGCAGGCTAC
AATAACCTGGAAGTAGCTGAGTACCTTCTAGAGCACGGGGCTGATGTCAATGCCCAGGACAAAGGAGGGC
TAATCCCACTTCACAACGCTGCGTCTTATGGGCATGTTGACATAGCAGCGTTACTGATAAAATACAACAC
GTGTGTAAACGCAACGGATAAGTGGGCCTTTACTCCCCTTCACGAAGCTGCCCAGAAAGGAAGGACGCAG
TTATGTGCCCTGCTCCTAGCACATGGCGCAGACCCAACCATGAAGAACCAGGAAGGTCAGACACCTTTAG
ATCTGGCGACGGCTGATGACATCCGGGCTCTGCTGATAGATGCCATGCCCCCTGAGGCCTTACCTACCTG
TTTTAAACCTCAGGCAACTGTAGTTAGTGCCTCTCTGATCTCACCAGCGTCCACCCCCTCCTGCCTCTCT
GCTGCCAGCAGCATAGATAACCTCACTGGCCCGTTAACGGATCTGGCTGTAGGAGGGGCCTCCAATGCAG
GGGATGGCGCTGCGGGTGCAGAAAGGAAGGAAGGAGAAGTTGCGGGTCTTGACATGAACATCAGCCAGTT
CCTTAAGAGCCTTGGCCTTGAGCACCTGAGGGACATTTTTGAAACAGAGCAGATTACGCTAGATGTGTTG
GCTGATATGGGTCATGAAGAATTGAAAGAAATAGGCATCAATGCATATGGACACCGCCACAAGTTGATCA
AGGGTGTTGAAAGACTTTTAGGTGGACAACAAGGAACCAATCCATATTTGACTTTTCACTGTGTGAATCA
GGGAACTATTTTGCTAGATCTTGCTCCAGAAGATAAAGAATATCAATCAGTAGAAGAAGAGATGCAGAGC
ACTATTCGAGAGCACAGAGACGGTGGGAACGCTGGCGGCATCTTCAACAGATACAACGTCATTCGAATTC
AGAAAGTTGTGAATAAGAAGCTGAGGGAGCGATTCTGCCACAGACAAAAGGAGGTGTCTGAGGAGAACCA
CAACCATCACAATGAGCGCATGCTGTTCCACGGTTCTCCTTTCATTAATGCAATTATTCATAAAGGGTTT
GATGAGCGACATGCGTACATTGGAGGGATGTTTGGAGCTGGAATTTACTTTGCTGAAAACTCCTCAAAAA
GCAATCAGTATGTTTATGGAATTGGAGGAGGAACAGGCTGTCCCACACACAAAGACAGATCATGTTATAT
ATGTCACAGACAAATGCTTTTCTGTAGAGTGACCCTTGGAAAGTCCTTCCTGCAATTCAGCACCATGAAA
ATGGCCCATGCACCCCCAGGCCATCACTCAGTCATCGGTAGACCAAGTGTCAATGGGCTGGCATATGCTG
AATATGTCATCTACAGAGGGGAACAGGCATATCCAGAATATCTCATCACCTACCAGATCATGAAGCCAGA
AGCCCCTTCACAGACCGCAACGGCAGCAGAGCAGAAGACCTAG

Translation (1320 aa):
MAASRRSQHHHHHHQQQLQPAPGASAPPPPPPPPLSPGLAPGPTPASPTAGGLAPFASPRHGLALPEGDG
SRDPPDRPRSPDPVDGAVCTVAAPAAVPAASAAVGVAPTPAGGGGGGGNNSASSASSPTSSSSSSPSSPG
SSLAESPEAAGVGSTATLGAGAAGLGPGVPAVSGALRELLEACRNGDVSRVKRLVDAANVNAKDMAGRKS
SPLHFAAGFGRKDVVEHLLQMGANVHARDDGGLIPLHNACSFGHAEVVSLLLCQGADPNARDNWNYTPLH
EAAIKGKIDVCIVLLQHGADPNIRNTDGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTP
LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC
VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAA
READLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE
RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQ
ILSESTPMRTSDVDYRLLEASKAGDLETVKQLCSPQNVNCRDLEGRHSTPLHFAAGYNRVSVVEYLLHHG
ADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNVADLWKFTPLHEAAAKGKYEICKLLLKHGADPT
KKNRDGNTPLDLVKEGDTDIQDLLRGDAALLDAAKKGCLARVQKLCTPENINCRDTQGRNSTPLHLAAGY
NNLEVAEYLLEHGADVNAQDKGGLIPLHNAASYGHVDIAALLIKYNTCVNATDKWAFTPLHEAAQKGRTQ
LCALLLAHGADPTMKNQEGQTPLDLATADDIRALLIDAMPPEALPTCFKPQATVVSASLISPASTPSCLS
AASSIDNLTGPLTDLAVGGASNAGDGAAGAERKEGEVAGLDMNISQFLKSLGLEHLRDIFETEQITLDVL
ADMGHEELKEIGINAYGHRHKLIKGVERLLGGQQGTNPYLTFHCVNQGTILLDLAPEDKEYQSVEEEMQS
TIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGF
DERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMK
MAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPSQTATAAEQKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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