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Report for CCDS15181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15181.1 Public Mus musculus 1 Capn10 23 108 98 CCDS HistoryNCBI Gene:23830Re-query CCDS DB by CCDS ID:15181.1Re-query CCDS DB by GeneID:23830See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027488.10 ENSMUSP00000027488.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027488.10Link to Ensembl Protein Viewer:ENSMUSP00000027488.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027488Re-query CCDS DB by Protein ID:ENSMUSP00000027488
Original member Current member NCBI NM_011796.2 NP_035926.2 Accepted alive Link to Nucleotide Sequence:NM_011796.2Link to Protein Sequence:NP_035926.2Re-query CCDS DB by Nucleotide ID:NM_011796Re-query CCDS DB by Protein ID:NP_035926Link to BLAST:NP_035926.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035926.2 666 Q9ESK3 666 100% 0 0

Chromosomal Locations for CCDS 15181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 92934874 92935014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92937945 92938076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92939323 92939519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92940283 92940500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92942482 92942623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92943300 92943466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92943679 92943941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92944695 92944897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92945017 92945278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92946774 92946973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92947215 92947260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92947509 92947538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGCGGGCGGTCCGGGCCGAGACGCCGGCGCGGGAGCTCTTCCGGGACGCGGCATTCCCCGCCTCGGACT
CCTCGCTCTTTTACAACTTGTCCACGCCTCTGGCCCAGTTTCGGGAGGACATCACTTGGAGACGACCCCA
GGAAATCTGTGCCACACCTCAGCTGTTTCCAGATAACCCATGGGAGGGACAGGTGAAGCAAGGGCTGCTG
GGAGATTGCTGGTTCCTGTGTGCCTGTGCCGCCCTTCAGAAGAGTCAACACCTCCTGGACCAGGTCTTCC
CTCCAGGACAGCCAGGCTGGTCTGACCAGAAATACCAAGGCTTCTTCACCTGTCGGATTTGGCAGTTTGG
ACACTGGGAGGAAGTGACCATAGATGATCGTCTGCCTTGTCTTGCCGGGAGACTCTGCTTTTCCCGGTGC
CAGAGAGAGGATGTGTTCTGGCTTCCCTTACTGGAAAAGGCCTATGCTAAGGTCCATGGATCGTATGAGC
ACCTGTGGGCAGGGCAAGTGGCAGATGCCTTAGTGGATCTCACTGGAAGCCTGGCAGAAAGGTGGAGCTT
GAAGGATGTAACGAAAGCCAGCGGCCAGCAGGACAGACCCAGTGGTGGGGAGCACAGAACTTGTCGGCAG
CTACTCCACCTGAAGGACCGGTGTCTAATCAGCTGCTCTGTGCTTAGCCCCAGAGCAGGTGCCAGGGAAC
TCGGAGAGTTCCATGCCTTCATCATCTCAGATCTGCAGGAGCTCAGGAGTCAGACTGGCCAGGGTATCCT
CCTGCTGCGGATTCACAACCCCTGGGGCCGGCGTTGTTGGCAGGGCCTCTGGAGAGAAGGAGGTGAAGGG
TGGAACCAGGTAGAGCCAGCTAAGGAGTCTGAGCTGCTGGCCCAACTCCAGGAAGGAGAGTTCTGGGTCG
AGGAAGAGGAGTTCCTCAGGGAGTTTGATGAGGTCACCATCGGCTACCCAGTCACAGAGGCCGGCCACCT
ACAGAGTCTCCACACAGAGAGGGTGCTGTGCCATACGCGGACACTGCCTGGTGCCTGGGTGACAGGGCAG
TCAGCAGGAGGCTGCCGGAACAACAGTTGCTTTCCCTGCAACCCCAAGTTCTGGTTACGGCTCTTGGAAC
CCAGCGAGGTGTGTGTGGCTGTTCTTCAGAGACCCCGGAGGCGCTTAGTGGGCCAGACTCGGGCACTGGC
GGGTGCCAGTCCTGCACCGGTGAACCTCCCAGGCAAAGACTACCAGGCTGTGGGCCTGCACATCTGGAAG
GTAGAGAAACGGAAGATCAGCCTGCCCAGAGTCCTGTCTGCACCCCCTGTGGCTGGCACTGCATGCCATG
CGTATGATCGTGAGATCCACTTGCGTTGTGAGCTCTCACCAGGCTACTACCTGGCCGTCCCTAGCACCTT
TTTGAAGGATGTGCCAGGGCAGTTCCTGCTCAGAGTCTTCTCCACTGGGAAAATCTCCCTCAGTGCCGTC
AGGCTGGCCACCAAGGGTGCATCGCCTGGAACAGCCCTGCCTGCAGGCGAGTGGGAGACTGTGCAGTTGC
AGGGCTGCTGGAGAGCTGGCCAGACAGCTGGGGGCAGCAGGAACTTTGCCTCTTACCCCTGCAATCCCTG
CCTCCCTTTCTCTGTTCCTGAGGGTGCTGGCCCCCGCTACATCCGTATCACCCTACAGCAACACTGCCGG
CTCAGTGACAGCCAGCTGCACCCCATTGGTTTCCATGTCTTTCAGGTTCCAGCAGACGGTGAGAACCAGG
ACGCGTGTTCCCTGCTGCTCCAGGAGCCACTGCTAAGCTGTGTACCACATCGCTACGCCCAGGAAGTGAG
CCGCCTCTGCCTCCTTTCTGTGGGGAACTACAGGATTGTTCCCTCCACCTACCTGCCAGATACAGAGGGT
ACCTTCACGGTAACCATAGCAACCAGAATCGATAGGCAGTCCATCCACAGCCAGGAGATGCTGGGCCAGC
TGCTCCAGGAGGTCTCCTTTATGGCAGTGATGAAAGCCTGA

Translation (666 aa):
MRAVRAETPARELFRDAAFPASDSSLFYNLSTPLAQFREDITWRRPQEICATPQLFPDNPWEGQVKQGLL
GDCWFLCACAALQKSQHLLDQVFPPGQPGWSDQKYQGFFTCRIWQFGHWEEVTIDDRLPCLAGRLCFSRC
QREDVFWLPLLEKAYAKVHGSYEHLWAGQVADALVDLTGSLAERWSLKDVTKASGQQDRPSGGEHRTCRQ
LLHLKDRCLISCSVLSPRAGARELGEFHAFIISDLQELRSQTGQGILLLRIHNPWGRRCWQGLWREGGEG
WNQVEPAKESELLAQLQEGEFWVEEEEFLREFDEVTIGYPVTEAGHLQSLHTERVLCHTRTLPGAWVTGQ
SAGGCRNNSCFPCNPKFWLRLLEPSEVCVAVLQRPRRRLVGQTRALAGASPAPVNLPGKDYQAVGLHIWK
VEKRKISLPRVLSAPPVAGTACHAYDREIHLRCELSPGYYLAVPSTFLKDVPGQFLLRVFSTGKISLSAV
RLATKGASPGTALPAGEWETVQLQGCWRAGQTAGGSRNFASYPCNPCLPFSVPEGAGPRYIRITLQQHCR
LSDSQLHPIGFHVFQVPADGENQDACSLLLQEPLLSCVPHRYAQEVSRLCLLSVGNYRIVPSTYLPDTEG
TFTVTIATRIDRQSIHSQEMLGQLLQEVSFMAVMKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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