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Report for CCDS24160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24160.1 Public Mus musculus 10 Lin7a 23 108 98 CCDS HistoryNCBI Gene:108030Re-query CCDS DB by CCDS ID:24160.1Re-query CCDS DB by GeneID:108030See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24160.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020057.15 ENSMUSP00000020057.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020057.15Link to Ensembl Protein Viewer:ENSMUSP00000020057.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020057Re-query CCDS DB by Protein ID:ENSMUSP00000020057
Original member NCBI NM_001039354.1 NP_001034443.1 Updated not alive Link to Nucleotide Sequence:NM_001039354.1Link to Protein Sequence:NP_001034443.1Re-query CCDS DB by Nucleotide ID:NM_001039354Re-query CCDS DB by Protein ID:NP_001034443
Current member NCBI NM_001039354.2 NP_001034443.1 Accepted alive Link to Nucleotide Sequence:NM_001039354.2Link to Protein Sequence:NP_001034443.1Re-query CCDS DB by Nucleotide ID:NM_001039354Re-query CCDS DB by Protein ID:NP_001034443Link to BLAST:NP_001034443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034443.1 233 Q8JZS0 233 100% 0 0

Chromosomal Locations for CCDS 24160.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 107271861 107271942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107323911 107324029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107380080 107380151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107382504 107382713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 107411953 107412171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGCTGAAGCCGAGCGTCACTTCGGCTCCCACGGCAGACATGGCGACATTGACAGTGGTCCAGCCGCTTA
CTCTGGACAGAGATGTTGCAAGAGCAATCGAACTACTGGAAAAGCTACAAGAATCTGGAGAAGTACCAGT
GCACAAGCTCCAGTCTCTCAAAAAGGTGCTTCAGAGTGAGTTTTGTACAGCAATCCGAGAGGTGTATCAA
TACATGCATGAAACGATTACTGTTAATGGCTGCCCTGAATTCCGTGCGAGGGCCACAGCAAAGGCAACAG
TTGCAGCTTTTGCAGCCAGCGAAGGCCACTCCCACCCTCGGGTAGTTGAACTGCCAAAGACTGATGAAGG
CCTGGGTTTTAATGTGATGGGAGGGAAGGAACAGAATTCCCCGATTTACATCTCCCGCATCATCCCTGGA
GGGGTGGCTGAAAGACATGGAGGCCTCAAAAGAGGGGACCAGCTGCTATCAGTGAACGGAGTGAGTGTGG
AAGGGGAGCACCATGAGAAAGCTGTGGAACTTCTCAAGGCTGCTAAGGACAGTGTGAAGCTGGTGGTCAG
ATACACCCCAAAAGTCCTGGAAGAGATGGAGGCTCGTTTCGAGAAGCTGCGGACAGCTCGGCGTCGACAG
CAGCAGCAGTTGCTCATTCAGCAGCAGCAACAGCAGCAGCAACAACAACCACAACAAAACCACATGTCAT
AG

Translation (233 aa):
MLKPSVTSAPTADMATLTVVQPLTLDRDVARAIELLEKLQESGEVPVHKLQSLKKVLQSEFCTAIREVYQ
YMHETITVNGCPEFRARATAKATVAAFAASEGHSHPRVVELPKTDEGLGFNVMGGKEQNSPIYISRIIPG
GVAERHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAKDSVKLVVRYTPKVLEEMEARFEKLRTARRRQ
QQQLLIQQQQQQQQQQPQQNHMS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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