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Report for CCDS35555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35555.1 Public Mus musculus 1 Col5a2 23 108 98 CCDS HistoryNCBI Gene:12832Re-query CCDS DB by CCDS ID:35555.1Re-query CCDS DB by GeneID:12832See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086430.4 ENSMUSP00000083620.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086430.4Link to Ensembl Protein Viewer:ENSMUSP00000083620.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086430Re-query CCDS DB by Protein ID:ENSMUSP00000083620
Original member Current member NCBI NM_007737.2 NP_031763.2 Accepted alive Link to Nucleotide Sequence:NM_007737.2Link to Protein Sequence:NP_031763.2Re-query CCDS DB by Nucleotide ID:NM_007737Re-query CCDS DB by Protein ID:NP_031763Link to BLAST:NP_031763.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031763.2 1497 Q3U962 1497 100% 0 0

Chromosomal Locations for CCDS 35555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 45376084 45376230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45376639 45376878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45378307 45378494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45380000 45380291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45382116 45382223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45383167 45383220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45383591 45383698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45384400 45384453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45384962 45385069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45386833 45386886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45388213 45388320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45389372 45389479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45390032 45390193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45391076 45391129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45391662 45391715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45391824 45391931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45392304 45392357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45392815 45392868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45393053 45393106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45394382 45394435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45394721 45394828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45396061 45396159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45396450 45396494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45400821 45400874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45402079 45402132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45403116 45403169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45403260 45403313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45403421 45403519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45404201 45404254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45404733 45404831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45405240 45405293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45406240 45406347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45406544 45406597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45407022 45407120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45407233 45407277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45407702 45407800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45411434 45411487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45413470 45413514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45414748 45414801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45416927 45416971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45417588 45417641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45418499 45418552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45421221 45421274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45421944 45421997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45422386 45422439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45423682 45423726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45426988 45427065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45429898 45430008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45434892 45434945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45436379 45436411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45437464 45437496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45438870 45438883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45442647 45442868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 45502821 45502914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4494 nt):
ATGATGGCAAACTGGGTGGGAGCAAGACCTCTCCTCATTCTTTCTGTTTTATTAGGGTACTGTGTCTCAA
TAAAAGCCCAGGAACAAGAGAATGATGAATATGATGAAGAAATAGCCTGTACTCAACATGGACAGATGTA
TTTAAATAGAGACATTTGGAAACCTTCTCCATGTCAGATCTGTGTCTGTGACAATGGTGCCATTCTTTGT
GACAAGATAGAGTGCCCAGAGGTGCTCAACTGTGCCAATCCTATAACACCCACTGGGGAGTGCTGTCCGG
TGTGCCCACAAACTGGAGGTGGAGATACTAGTTTTGGTAGAGGAAGAAAGGGACAAAAAGGAGAACCAGG
ATTAGTGCCTGTTGTAACAGGTATACGCGGTCGTCCAGGACCTGCAGGCCCCCCAGGATCACAAGGACCA
AGAGGGGACCGAGGCCCTAAAGGAAGACCTGGTCCTCGTGGTCCTCAGGGAATTGATGGAGAGCCAGGTG
TGCCTGGTCAGCCAGGTGCTCCAGGGCCTCCTGGGCACCCCTCTCACCCAGGACCTGATGGCATGAGCAG
GCCTTTTTCAGCTCAGATGGCTGGGCTGGATGAAAAATCTGGACTTGGAAGTCAAGTAGGACTCATGCCT
GGCTCTGTGGGTCCTGTTGGCCCAAGAGGACCTCAGGGTTTACAAGGACAGCAAGGTGGTGTGGGACCCG
CAGGACCTCCTGGTGAGCCTGGCGAGCCTGGACCAATGGGTCCAATTGGTTCTCGTGGACCAGAGGGCCC
ACCTGGGAAGCCCGGAGAAGATGGTGAACCTGGAAGAAATGGGAATACAGGTGAAGTGGGATTCTCAGGA
TCACCAGGTGCTCGAGGCTTCCCTGGTGCTCCTGGTCTCCCTGGCTTGAAAGGTCACAGAGGACACAAAG
GTCTTGAAGGCCCCAAAGGTGAAATTGGAGCACCTGGTGCTAAGGGTGAAGCTGGCCCCACTGGTCCAAT
GGGTGCTATGGGCCCTCTGGGACCAAGAGGAATGCCAGGAGAGAGGGGAAGACTTGGGCCACAGGGTGCT
CCTGGAAAACGGGGTGCCCACGGTATGCCTGGAAAACCTGGACCAATGGGTCCTCTTGGGATACCTGGCT
CTTCCGGTTTTCCAGGAAATCCTGGAATGAAGGGAGAAGCAGGTCCTACTGGAGCCCGAGGCCCTGAAGG
TCCTCAGGGGCAGAGAGGTGAAACTGGGCCACCTGGTCCAGCTGGCTCTCAGGGTCTTCCTGGTGCAGTG
GGGACTGATGGTACACCTGGCGCCAAAGGCCCCACAGGCTCTGCAGGAACCTCTGGCCCTCCTGGCTTGG
CAGGGCCCCCTGGGTCTCCTGGCCCTCAAGGCAGTACTGGACCTCAGGGAATCCGAGGACAATCGGGTGA
TCCAGGAGTTCCAGGTTTCAAAGGAGAAGCTGGTCCAAAGGGAGAACCAGGGCCACATGGTATTCAGGGT
CCCATTGGTCCACCTGGTGAAGAAGGCAAAAGAGGTCCTCGGGGTGATCCAGGCACAGTTGGTCCTCCAG
GACCAATGGGAGAAAGGGGCGCTCCTGGCAATCGTGGTTTTCCAGGGTCTGATGGTTTACCTGGACCAAA
GGGTGCTCAGGGAGAGCGTGGTCCTGTAGGTTCTTCGGGGCCTAAAGGAGGCCAGGGAGATCCAGGACGT
CCAGGAGAACCTGGGCTTCCAGGTGCTCGGGGTCTGACAGGAAATCCTGGTGTTCAAGGTCCTGAAGGAA
AACTTGGGCCTTTGGGTGCTCCTGGGGAAGATGGTCGGCCAGGTCCTCCAGGCTCCATTGGGATCAGAGG
ACAGCCTGGAAGCATGGGCCTTCCAGGCCCCAAAGGTAGCAGTGGTGACCTTGGAAAACCAGGAGAAGCA
GGAAATGCTGGTGTGCCTGGGCAAAGGGGGGCTCCTGGCAAAGATGGAGAAGTTGGTCCTTCAGGCCCTG
TGGGACCTCCGGGCCTAGCTGGGGAAAGAGGAGAGCAGGGACCTCCAGGCCCCACTGGCTTTCAGGGACT
TCCTGGACCTCCAGGGCCACCTGGAGAAGGTGGAAAGGCTGGTGATCAAGGTGTTCCTGGAGAGCCTGGA
GCAGTTGGCCCATTAGGACCTCGGGGAGAAAGAGGGAATCCTGGAGAAAGAGGAGAGCCAGGGATAACTG
GACTGCCTGGGGAGAAAGGCATGGCTGGAGGACATGGCCCTGATGGTCCAAAGGGCAACCCAGGTCCAAC
TGGGACCATTGGAGACACAGGGCCACCAGGTCTTCAGGGCATGCCAGGAGAAAGAGGAATTGCAGGAACA
CCTGGCCCTAAGGGTGACCGAGGTGGCATAGGAGAGAAAGGTGCTGAAGGAACAGCAGGAAATGACGGGG
CAAGGGGTCTTCCAGGTCCCTTGGGACCTCCAGGTCCTGCAGGCCCTACTGGAGAAAAGGGTGAACCTGG
TCCTAGAGGCTTAGTTGGCCCTCCTGGCTCCCGTGGCAATCCTGGTTCTCGTGGTGAAAATGGTCCAACT
GGAGCTGTTGGTTTTGCTGGACCCCAGGGTCCCGATGGACAGCCTGGTGTCAAGGGTGAGCCTGGAGAGC
CAGGACAGAAGGGAGATGCTGGGTCTCCTGGACCCCAAGGGCTAGCAGGATCACCTGGCCCCCATGGTCC
ACATGGTGTTCCTGGACTGAAAGGCGGTAGAGGAACCCAGGGTCCACCTGGTGCTACAGGGTTTCCTGGT
TCTGCTGGCAGAGTTGGGCCTCCAGGCCCTGCTGGAGCTCCAGGACCTGCAGGGCCCGCAGGAGAACCTG
GGAAGGAAGGACCTCCTGGTCTTCGTGGTGACCCTGGCTCTCATGGGCGAGTGGGAGATAGAGGACCAGC
TGGCCCACCTGGTAGCCCAGGAGATAAAGGGGACCCAGGAGAAGATGGACAACCTGGTCCAGATGGTCCT
CCTGGTCCCGCTGGTACCACTGGGCAAAGAGGAATTGTTGGAATGCCCGGACAACGTGGGGAACGAGGAA
TGCCTGGCCTTCCTGGCCCAGCGGGTACACCAGGAAAAGTAGGACCAACTGGTGCGACAGGAGATAAAGG
TCCCCCTGGACCTGTAGGACCTCCAGGTTCCAATGGTCCTGTAGGAGAACCTGGGCCAGAAGGTCCGGCT
GGTAATGATGGTACCCCAGGACGGGATGGTGCTGTTGGAGAACGGGGTGACCGTGGAGACCCCGGGCCTG
CTGGTCTACCAGGCTCTCAGGGTGCCCCTGGAACTCCTGGCCCTGTTGGTGCCCCTGGAGATGCAGGACA
AAGAGGAGAGCCAGGTTCTCGAGGCCCTGTAGGACCACCTGGTCGAGCTGGAAAGCGTGGTTTACCTGGA
CCACAAGGACCTCGAGGTGACAAGGGTGACAATGGAGACAGAGGTGACCGAGGTCAGAAAGGCCACAGAG
GGTTCACTGGCCTGCAGGGTCTTCCTGGACCTCCTGGTCCAAATGGTGAACAAGGAAGTGCTGGCATTCC
TGGTCCTTTCGGTCCAAGAGGTCCTCCAGGACCAGTAGGTCCTTCAGGAAAGGAAGGAAACCCTGGGCCA
CTTGGACCAATTGGACCTCCTGGTGTGCGGGGCAGTGTAGGAGAAGCAGGACCAGAGGGTCCTCCTGGTG
AACCTGGGCCTCCTGGCCCTCCAGGTCCCCCTGGCCATCTTACTGCTGCTCTTGGTGATATCATGGGACA
CTATGATGAGAACATGCCAGATCCACTTCCAGAGTTTACGGAAGACCAGGCAGCTCCAGATGACACAAAC
AAAACAGACCCTGGGATCCATGTTACCCTGAAGTCTCTCAGTAGTCAGATTGAAACCATGCGTAGCCCTG
ATGGTTCCAAGAAACACCCAGCCCGCACTTGTGATGATTTAAAGCTTTGCCATCCCACAAAGCAGAGCGG
TGAATATTGGATTGATCCTAACCAGGGATCAGCTGAAGATGCAATCAAAGTTTACTGCAATATGGAAACA
GGAGAGACATGTATTTCAGCAAACCCAGCCAGTGTTCCACGTAAAACCTGGTGGGCCAGCAAATCCCCTG
ACAATAAGCCTGTGTGGTACGGTCTTGACATGAATAGAGGATCTCAGTTCACATATGGAGATTACCAGTC
TCCTAACACAGCTATCACTCAGATGACCTTTTTGCGTCTTTTATCAAAAGAAGCCTCGCAGAACCTTACT
TACATCTGTAGGAACACTGTTGGATATATGGATGATCAAGCTAAAAACCTCAAGAAAGCTGTGGTCCTTA
AAGGGTCAAACGACTTAGAAATAAAAGGAGAAGGAAACATCAGATTCAGATACACAGTTCTTCAAGACAC
CTGCTCTAAGCGAAATGGAAATGTAGGCAAAACTATCTTTGAATACAGAACACAGAATGTGGCCCGCTTG
CCCATCATAGATGTTGGTCCTGTGGATATTGGCAATGCAGACCAGGAATTTGGCCTTGATATTGGGCCAG
TTTGTTTCATGTAA

Translation (1497 aa):
MMANWVGARPLLILSVLLGYCVSIKAQEQENDEYDEEIACTQHGQMYLNRDIWKPSPCQICVCDNGAILC
DKIECPEVLNCANPITPTGECCPVCPQTGGGDTSFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGP
RGDRGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGHPSHPGPDGMSRPFSAQMAGLDEKSGLGSQVGLMP
GSVGPVGPRGPQGLQGQQGGVGPAGPPGEPGEPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNTGEVGFSG
SPGARGFPGAPGLPGLKGHRGHKGLEGPKGEIGAPGAKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGA
PGKRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPGAV
GTDGTPGAKGPTGSAGTSGPPGLAGPPGSPGPQGSTGPQGIRGQSGDPGVPGFKGEAGPKGEPGPHGIQG
PIGPPGEEGKRGPRGDPGTVGPPGPMGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGGQGDPGR
PGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDLGKPGEA
GNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTGFQGLPGPPGPPGEGGKAGDQGVPGEPG
AVGPLGPRGERGNPGERGEPGITGLPGEKGMAGGHGPDGPKGNPGPTGTIGDTGPPGLQGMPGERGIAGT
PGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPT
GAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPHGVPGLKGGRGTQGPPGATGFPG
SAGRVGPPGPAGAPGPAGPAGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGSPGDKGDPGEDGQPGPDGP
PGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPA
GNDGTPGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGEPGSRGPVGPPGRAGKRGLPG
PQGPRGDKGDNGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGP
LGPIGPPGVRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDENMPDPLPEFTEDQAAPDDTN
KTDPGIHVTLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSAEDAIKVYCNMET
GETCISANPASVPRKTWWASKSPDNKPVWYGLDMNRGSQFTYGDYQSPNTAITQMTFLRLLSKEASQNLT
YICRNTVGYMDDQAKNLKKAVVLKGSNDLEIKGEGNIRFRYTVLQDTCSKRNGNVGKTIFEYRTQNVARL
PIIDVGPVDIGNADQEFGLDIGPVCFM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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