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Report for CCDS29880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29880.1 Public Mus musculus 19 Sfxn2 23 108 98 CCDS HistoryNCBI Gene:94279Re-query CCDS DB by CCDS ID:29880.1Re-query CCDS DB by GeneID:94279See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026011.7 ENSMUSP00000026011.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026011.7Link to Ensembl Protein Viewer:ENSMUSP00000026011.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026011Re-query CCDS DB by Protein ID:ENSMUSP00000026011
Original member Current member NCBI NM_053196.3 NP_444426.3 Accepted alive Link to Nucleotide Sequence:NM_053196.3Link to Protein Sequence:NP_444426.3Re-query CCDS DB by Nucleotide ID:NM_053196Re-query CCDS DB by Protein ID:NP_444426Link to BLAST:NP_444426.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444426.3 322 Q925N2 322 100% 0 0

Chromosomal Locations for CCDS 29880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46582503 46582663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46582807 46582977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46585705 46585803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46587935 46588010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46588224 46588309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46590141 46590201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46590484 46590550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46591121 46591170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46591493 46591542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46592300 46592347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46594672 46594771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGAGGGGGATCTGTCTGGCTTTAATATTGATGCTCCCCGCTGGGACCAGTGCACTTTCCTGGGGCGCG
TGAAGCACTTTTTTAACATCACAGATCCTCGCACGGTCTTTGCATCAGAGCAGGAGCTGGACTGGGCCAA
GGCGGTGGTGGAGAAGAGCAGGATGGGACTTGTGCCCCCTGGCACTCAGATGGAGCAGCTGCTGTATGCG
AAGAAGCTCTACGACTCGGCCTTCCACCCTGACACTGGGGAGAAGATGAATGTCATTGGGCGGATGTCCT
TCCAGGTCCCTGGTGGCATGCTCATCACGGGCTTCATGCTCCAGTTCTACAGGACAATGCCTGCAGTCAT
TTTCTGGCAGTGGGTGAACCAGTCCTTTAATGCCTTGGTCAACTACACCAACAGGAATGCAGCTTCCCCC
ACGTCTGTCAGGCAGATGGCCCTCTCCTACTTCACAGCTACTACTACTGCGGTGGCCACTGCAGTGGGCA
TGAACATGTGGACAAAGAGAGCCCCACCCTTGGTGGGCCGATGGGTGCCTTTTGCCGCTGTGGCTGCCGC
TAACTGTGTCAATATCCCAATGATGCGACAGCAGGAACTCATTCAGGGCATCTGTGTGAAGGACAGGAAC
CAAAATGAGCTTGGCCATTCTCAGAGAGCTGCGGCTGTGGGCATCGCACAAGTGGTTATCTCTCGGATCA
CCATGGCAGCCCCTGGCATGATCCTGTTGCCTGTCATCATGGAGAGGCTGGAGAGACTACACCTGATGAA
GAAGGTCAAAGTGATGCACGCCCCCCTGCAGGTCTTGCTGTGTGGCTGCTTCCTCCTCTTTATGGTGCCA
GTGGCGTGCGGACTCTTCCCTCAGGAATGTGAATTATCAGTTTCCTATCTAGAGCCAGAGCTACGGGACA
CCATCAAGGCCAAGTATGGAGAACAAGTCCTCTTTGTCTACTTTAATAAGGGTCTCTAA

Translation (322 aa):
MEGDLSGFNIDAPRWDQCTFLGRVKHFFNITDPRTVFASEQELDWAKAVVEKSRMGLVPPGTQMEQLLYA
KKLYDSAFHPDTGEKMNVIGRMSFQVPGGMLITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASP
TSVRQMALSYFTATTTAVATAVGMNMWTKRAPPLVGRWVPFAAVAAANCVNIPMMRQQELIQGICVKDRN
QNELGHSQRAAAVGIAQVVISRITMAAPGMILLPVIMERLERLHLMKKVKVMHAPLQVLLCGCFLLFMVP
VACGLFPQECELSVSYLEPELRDTIKAKYGEQVLFVYFNKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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