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Report for CCDS22234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22234.1 Public Mus musculus 8 Ubxn8 23 108 98 CCDS HistoryNCBI Gene:108159Re-query CCDS DB by CCDS ID:22234.1Re-query CCDS DB by GeneID:108159See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095349.5 ENSMUSP00000092992.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095349.5Link to Ensembl Protein Viewer:ENSMUSP00000092992.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095349Re-query CCDS DB by Protein ID:ENSMUSP00000092992
Original member Current member NCBI NM_178648.2 NP_848763.2 Accepted alive Link to Nucleotide Sequence:NM_178648.2Link to Protein Sequence:NP_848763.2Re-query CCDS DB by Nucleotide ID:NM_178648Re-query CCDS DB by Protein ID:NP_848763Link to BLAST:NP_848763.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848763.2 277 Q9QZ49 277 99.639% 0 1

Chromosomal Locations for CCDS 22234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33621530 33621700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33623162 33623236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33626324 33626365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33629237 33629374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33633502 33633627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33635289 33635359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33638480 33638602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33641850 33641937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGCTTCTCGTGGCGTCGTGGGCCTTTTCTTGCTCTCTGCTCTCCCTCTCTTGTGTCTGGAGCTCCGGC
GCGGGATCCCGAGTCTCGGCATTAAAGATCTCATTTTGCTGAGTGGCCGGATATTCCTACTGCTGGCCCT
GCTTACCTTAGTCATTTCCGTGACCACCTCCTGGTTTAACTCACTGAAACCTTCGCAAGGTCATCTGAAA
GAAGGAGAAAAAGAGAATGAGAAAAGACGGAGACTCGTGAGGGAAAGGCAACAGGAAGCCCAGGGTGAGA
AGGCCAGCAGATATATAGAGAATGTTTTAAAGCCTCAGCAGGAAATGAAGTTGAAAAAACTGGAGGAGCG
GTTTTATCAGATGACAGGGGAGACCTGGAAGCTGACCGCTGGCCACCGACTCCTAGAGGGGGATGAAGAT
TCGGAGTTTGAAAATTCAAGTCAGGCATCTTTTGAAACAATAAACGGAGAGGCAGCAAGAAGACAGAACT
TGCCTAAGTTTTCAACTGAAATTTCACCAGCTGCTCGGCCGCTCCTGAGGAAGGAGGTTCCTGATTTACC
TGAAGAACCATCAGAAACAGCTGAAGAGGTAGTTACTGTTGCCCTTCGATGCCCAAATGGACGTGTTCTG
AGGAGAAGATTTTTCAAGTCGTGGAATTCACAGGTCTTACTTGACTGGATGATGAAAGTTGGGTACCACA
AATCCCTATATAGACTTTCCAATTCCTTTCCCAGAAGGGCCCTGGAAGTGGAGGGAGGCTCGTCACTGGA
GGACATAGGAATAACTGTGGACACTGTACTTAACGTGGAAGAGAAAGAGCAGAGCAGCCAGTAG

Translation (277 aa):
MASRGVVGLFLLSALPLLCLELRRGIPSLGIKDLILLSGRIFLLLALLTLVISVTTSWFNSLKPSQGHLK
EGEKENEKRRRLVRERQQEAQGEKASRYIENVLKPQQEMKLKKLEERFYQMTGETWKLTAGHRLLEGDED
SEFENSSQASFETINGEAARRQNLPKFSTEISPAARPLLRKEVPDLPEEPSETAEEVVTVALRCPNGRVL
RRRFFKSWNSQVLLDWMMKVGYHKSLYRLSNSFPRRALEVEGGSSLEDIGITVDTVLNVEEKEQSSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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