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Report for CCDS51241.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51241.1 Public Mus musculus 4 Pramel17 23 108 98 CCDS HistoryNCBI Gene:545662Re-query CCDS DB by CCDS ID:51241.1Re-query CCDS DB by GeneID:545662See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51241.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084386.5 ENSMUSP00000081421.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084386.5Link to Ensembl Protein Viewer:ENSMUSP00000081421.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084386Re-query CCDS DB by Protein ID:ENSMUSP00000081421
Original member Current member EBI ENSMUST00000106919.7 ENSMUSP00000102532.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106919.7Link to Ensembl Protein Viewer:ENSMUSP00000102532.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106919Re-query CCDS DB by Protein ID:ENSMUSP00000102532
Original member Current member NCBI NM_001033790.3 NP_001028962.1 Accepted alive Link to Nucleotide Sequence:NM_001033790.3Link to Protein Sequence:NP_001028962.1Re-query CCDS DB by Nucleotide ID:NM_001033790Re-query CCDS DB by Protein ID:NP_001028962Link to BLAST:NP_001028962.1

Chromosomal Locations for CCDS 51241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101835371 101835941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101836825 101837397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101837826 101838112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGAGCACCTACAACCCTCCCACACTCCTGCAGCTCGCACTGGACGGGGTGCTGAGGAAGGATTCCATAG
ACTTCTCTGATCTGGAGTACCTGCCCATCACGCTCTTCCCACCACTCTTCATAAAGGCCTTCAATAGCAG
ACACACAGAGATAGTAAAGAAAATGGTGGCAACCTGGCCCTTTCCCTGCCTCCCTGTGGGGGCACTGCTT
AAAACCGCTGGTGTGGAAATGCTGCAAGCTGTGCTGGATGGCATAGATATACTGCTGACACAGAATGTTA
GTCTCAGGTGCAAGCTTCAAGTGTTGGACTTGAGATTTTTGCACCAGGATTTCTGGACTGGAAAACAGAA
TGCCATCTGCCCAGCAGATATTTTGATCAAGAAGCAAGTCCCAGAGGGCCTTCCTAACTATCCACTAAGG
CAGTGTTTGCAGGTAGTCACTAACCTGGCCCTAGTATCTTCTCTAAACGAACACCAAATATGCTTGCTGC
AGTGGGCCCAACAAAAAAAAGACTCTTTGCAGCTATGCTGTCTGAAGATGACGATTTATAACCTCCCACC
AGAGGTTATCAGCGAGGTCTTGGACACTTTCCAGCCGACCTATATTGTGGATTTGGAAATACACACACGA
GAGGTCATGTCCTTCCTAGGTTTCTTTGCCCATTTCCTTGGCCAGATGAGAAATCTTGTCAAATTCTATC
TAAATCAAATCGACTTCTACTTTAGTGTTGCGAACACAGTGACAGATGGAAAGATAGGTGCTGCCAAATT
CTTTTCTCAGTTCTCCCAACTCAACCATCTCCAGCATGTCTATATGAATGGTGCCTACATTTCCTATGAC
AACATGAAAAAGTTGTTCAGATGCCTGAAGAGTCCCTTGGAGACCTTGTTTTTTACTTTCTGCCATCTCT
CAATGTCCGACTTGAGACACATGTCAGACTGTCAGAGGCTCTATCAATTGAAACACCTATACTTAAAGGG
TGTAGTGTTTTCCAAGTCATATTTCAAGAGTCTCCGAGTTCTCCTAGAGAATGTATCTGCAACTCTACAG
ACCCTGGGGTTAGAGCACTGCAGGATGAAGGACTCTCACCTCAAAGTCCTCTTGCCTGCCTTGATCCAGT
GCTCCCAGCTCATCTTTGTCAATTTCTTTGACAACCACTTCTCCAGTCCTGTACTGAAGGACCTTCTGCG
ATGCATGGCTAACCTAAGCAAGTTGACTGGAGAGCGGTACCCCGTCCCTGTAGAGTGCTATAATGACATA
GGTAAAGTTATGGTGGAGAGATTTTTCCAACTGTGTCCTGAGCTCATGGATCTACTCACGGCTAAAAGGC
AGCCCAAGAAAATCTTCTTTGCTACTGTCTGCTGCCCTAATTGTTTGAGACGCTGTGTCTATGACTTGAA
CACCACCAGACTTTGCCATTGTTGGGAGTAA

Translation (476 aa):
MSTYNPPTLLQLALDGVLRKDSIDFSDLEYLPITLFPPLFIKAFNSRHTEIVKKMVATWPFPCLPVGALL
KTAGVEMLQAVLDGIDILLTQNVSLRCKLQVLDLRFLHQDFWTGKQNAICPADILIKKQVPEGLPNYPLR
QCLQVVTNLALVSSLNEHQICLLQWAQQKKDSLQLCCLKMTIYNLPPEVISEVLDTFQPTYIVDLEIHTR
EVMSFLGFFAHFLGQMRNLVKFYLNQIDFYFSVANTVTDGKIGAAKFFSQFSQLNHLQHVYMNGAYISYD
NMKKLFRCLKSPLETLFFTFCHLSMSDLRHMSDCQRLYQLKHLYLKGVVFSKSYFKSLRVLLENVSATLQ
TLGLEHCRMKDSHLKVLLPALIQCSQLIFVNFFDNHFSSPVLKDLLRCMANLSKLTGERYPVPVECYNDI
GKVMVERFFQLCPELMDLLTAKRQPKKIFFATVCCPNCLRRCVYDLNTTRLCHCWE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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