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Report for CCDS20822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20822.1 Public Mus musculus 7 Zbtb45 23 108 98 CCDS HistoryNCBI Gene:232879Re-query CCDS DB by CCDS ID:20822.1Re-query CCDS DB by GeneID:232879See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051390.8 ENSMUSP00000056086.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051390.8Link to Ensembl Protein Viewer:ENSMUSP00000056086.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051390Re-query CCDS DB by Protein ID:ENSMUSP00000056086
Original member Current member EBI ENSMUST00000172240.1 ENSMUSP00000130439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172240.1Link to Ensembl Protein Viewer:ENSMUSP00000130439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172240Re-query CCDS DB by Protein ID:ENSMUSP00000130439
Original member Current member EBI ENSMUST00000210282.1 ENSMUSP00000147298.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210282.1Link to Ensembl Protein Viewer:ENSMUSP00000147298.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210282Re-query CCDS DB by Protein ID:ENSMUSP00000147298
Original member Current member NCBI NM_001024699.2 NP_001019870.1 Accepted alive Link to Nucleotide Sequence:NM_001024699.2Link to Protein Sequence:NP_001019870.1Re-query CCDS DB by Nucleotide ID:NM_001024699Re-query CCDS DB by Protein ID:NP_001019870Link to BLAST:NP_001019870.1
Original member Current member NCBI NM_001360833.1 NP_001347762.1 Accepted alive Link to Nucleotide Sequence:NM_001360833.1Link to Protein Sequence:NP_001347762.1Re-query CCDS DB by Nucleotide ID:NM_001360833Re-query CCDS DB by Protein ID:NP_001347762Link to BLAST:NP_001347762.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019870.1 520 Q52KG4 520 100% 0 0
NP_001347762.1 520 Q52KG4 520 100% 0 0

Chromosomal Locations for CCDS 20822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13006124 13006380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 13007024 13008329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGCAGCCACAGAGGCAGTGCACCACATCCACCTACAGAACTTTTCGCGCTCACTACTGGAGACCCTCA
ATGGGCAGAGGCTAGGCGGTCACTTCTGTGATGTGACCGTGCGCATCCGTGAGGCTTCTCTGCGTGCTCA
CCGCTGTGTGCTGGCCGCTGGCTCACCCTTCTTTCAGGATAAACTGCTGCTCGGCCACTCAGAGATTCGT
GTGCCACCAGTGGTGCCTGCGCAGACAGTGCGCCAGCTGGTCGAGTTCCTTTACAGCGGCTCGTTGGTGG
TGGCACAGGGCGAAGCGCTGCAGGTACTCACTGCAGCGTCGGTGCTTCGCATCCAGACCGTCATTGACGA
GTGCACACAGATCATCGCTCGTGCCCGTGTCCCCAACACCCCGGCGCCTGCGCCTCTGCCACCACCCGTG
CCCCCTCCACTAGCACCCGCGCAGCTGCGCCACCGTCTGCGCCACTTGCTGGCCGCCCGCCCCCCGGGTC
ATCCCAACGCCGCGCACAGCCGCAAGCAGCGCCAGCCCGCGCGTCTTCAGCTACCTGCACCCCCAGCACC
CATCAAGGCTGAGGGGCCTGATGCGGAGCCAGCGCTGACTGCCGCGCCTGAAGACAGAGGTGAAGAGGAT
GACGATGAGGAAACGGATGAAGAAACCGACGCTGAAGAAGGTGAAGGAGGCGGCGGCGGCCCGGGTGAGG
GCCAGGCTCCCCCTGCCTTCCCCGACTGTGCAGGGGGCTTCCTTACCACTGCAGCTGACAGCGCTCGAGA
GGATCCCCCTGCATCCACTGGCATCACTGATTATGGTGGTGCCGGGAGAGATTTCCTTCGGGGGACTGGG
GTCACTGAAGATGTGTTCCCAGATAGTTATGTGTCCGCTTGGCATGAGGAAAGCAGCGGAGGGCCAGAAA
GTTGTCCGGTGGAAACGTCTGCTCCACCCGACTGTGCCCTGGCTGGGCCTCGCCCAACAGGTGTGAAGAC
CCCAGGGCCCCCCGTGGCTCTCTTTCCCTTTCACTTGGGTGCTCCCGGCCCCCCAGCGCCAACACCTCCT
ACTCCATCTGGGCCAGCCCCTGCACCCCCGCCCACCTTCTACCCCACGCTCCAGCCAGATGCAGCCCCCA
GTGCTCAGCTGGGAGAAACGCAGGCGGTGCCAGCGGCCCCTGCCGCTCAGGCCACAGCCATCTCTGGCAC
TCCTGTGCGCGCCCCGGGTGGCCAAGGTGCTGAGCAACCCGCCTATGAGTGTAGCCACTGCCGCAAGACG
TTCAGCTCGCGGAAAAACTACACCAAGCACATGTTCATCCACTCTGGGGAGAAGCCACATCAGTGCGCTG
TGTGTTGGCGATCCTTCTCGCTACGCGATTACCTGCTCAAGCATATGGTCACACACACTGGCGTGCGAGC
CTTCCAGTGTGCAGTGTGTGCCAAGCGCTTCACTCAGAAGAGCTCCCTCAACGTGCACATGCGCACACAT
AGGCCTGAGCGTGCGCCCTGCCCTGCCTGTGGGAAAGTTTTCTCACACCGTGCACTGCTGGAGCGACACC
TTGCAGCTCACCCTGCACCTTGA

Translation (520 aa):
MAATEAVHHIHLQNFSRSLLETLNGQRLGGHFCDVTVRIREASLRAHRCVLAAGSPFFQDKLLLGHSEIR
VPPVVPAQTVRQLVEFLYSGSLVVAQGEALQVLTAASVLRIQTVIDECTQIIARARVPNTPAPAPLPPPV
PPPLAPAQLRHRLRHLLAARPPGHPNAAHSRKQRQPARLQLPAPPAPIKAEGPDAEPALTAAPEDRGEED
DDEETDEETDAEEGEGGGGGPGEGQAPPAFPDCAGGFLTTAADSAREDPPASTGITDYGGAGRDFLRGTG
VTEDVFPDSYVSAWHEESSGGPESCPVETSAPPDCALAGPRPTGVKTPGPPVALFPFHLGAPGPPAPTPP
TPSGPAPAPPPTFYPTLQPDAAPSAQLGETQAVPAAPAAQATAISGTPVRAPGGQGAEQPAYECSHCRKT
FSSRKNYTKHMFIHSGEKPHQCAVCWRSFSLRDYLLKHMVTHTGVRAFQCAVCAKRFTQKSSLNVHMRTH
RPERAPCPACGKVFSHRALLERHLAAHPAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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