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Report for CCDS39270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39270.1 Public Mus musculus 5 Diablo 23 108 98 CCDS HistoryNCBI Gene:66593Re-query CCDS DB by CCDS ID:39270.1Re-query CCDS DB by GeneID:66593See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111587.9 ENSMUSP00000107214.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111587.9Link to Ensembl Protein Viewer:ENSMUSP00000107214.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111587Re-query CCDS DB by Protein ID:ENSMUSP00000107214
Original member Current member EBI ENSMUST00000125652.7 ENSMUSP00000115045.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125652.7Link to Ensembl Protein Viewer:ENSMUSP00000115045.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125652Re-query CCDS DB by Protein ID:ENSMUSP00000115045
Original member Current member NCBI NM_023232.3 NP_075721.3 Accepted alive Link to Nucleotide Sequence:NM_023232.3Link to Protein Sequence:NP_075721.3Re-query CCDS DB by Nucleotide ID:NM_023232Re-query CCDS DB by Protein ID:NP_075721Link to BLAST:NP_075721.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075721.3 237 Q9JIQ3 237 100% 0 0

Chromosomal Locations for CCDS 39270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123512511 123512707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123517737 123517833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123517955 123518065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123520041 123520172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123523255 123523381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123524071 123524120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCGGCTCTGAGAAGTTGGGTGACTCGGAGCGTCTGCTCTCTGTTCAGGTACAGACAGCGTTTTCCTG
TCTTGGCTAACTCTAAGAAACGCTGTTTCTCAGAATTGATAAAACCATGGCACAAAACTGTGTTGACTGG
ATTTGGCATGACACTGTGTGCGGTTCCTATTGCTCAGAAATCGGAGCCTCAGTCTCTCAGTAACGAAGCA
TTGATGAGGAGGGCTGTGTCTTTGGTAACAGATAGCACCTCTACCTTTCTGTCTCAAACCACCTACGCGC
TGATTGAAGCAATCACCGAGTATACTAAGGCTGTTTACACGTTAGTGTCTCTGTACCGACAATATACAAG
TTTACTTGGGAAGATGAATTCCCAGGAGGAAGATGAGGTGTGGCAGGTAATTATAGGAGCCAGAGTTGAG
ATGACTTCAAAACAGCAGGAATATTTGAAGTTGGAGACCACTTGGATGACAGCGGTTGGCCTTTCAGAGA
TGGCTGCTGAGGCTGCCTATCAAACTGGAGCAGATCAGGCCTCCATAACTGCCAGGAATCACATCCAGTT
GGTGAAGTCACAGGTACAGGAGGTGCGCCAGCTCTCCCAGAAGGCAGAAACCAAGTTGGCTGAAGCACAG
ACAAAAGAGCTGCACCAGAAAGCACAGGAAGTGAGTGATGAGGGGGCTGACCAGGAAGAGGAGGCCTACC
TGCGTGAAGATTGA

Translation (237 aa):
MAALRSWVTRSVCSLFRYRQRFPVLANSKKRCFSELIKPWHKTVLTGFGMTLCAVPIAQKSEPQSLSNEA
LMRRAVSLVTDSTSTFLSQTTYALIEAITEYTKAVYTLVSLYRQYTSLLGKMNSQEEDEVWQVIIGARVE
MTSKQQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKSQVQEVRQLSQKAETKLAEAQ
TKELHQKAQEVSDEGADQEEEAYLRED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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