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Report for CCDS11436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11436.1 Public Homo sapiens 17 CNTNAP1 24 110 108 CCDS HistoryNCBI Gene:8506Re-query CCDS DB by CCDS ID:11436.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11436.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264638.9 ENSP00000264638.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264638.9Link to Ensembl Protein Viewer:ENSP00000264638.3Re-query CCDS DB by Nucleotide ID:ENST00000264638Re-query CCDS DB by Protein ID:ENSP00000264638
Original member Current member NCBI NM_003632.3 NP_003623.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003632.3Link to Protein Sequence:NP_003623.1Re-query CCDS DB by Nucleotide ID:NM_003632Re-query CCDS DB by Protein ID:NP_003623Link to BLAST:NP_003623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003623.1 1384 P78357 1384 100% 0 0

Chromosomal Locations for CCDS 11436.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42682830 42682896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42683821 42683922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42684036 42684229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42684991 42685138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42685217 42685420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42685957 42686141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42686903 42687046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42687720 42687981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42688462 42688611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42688876 42689047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42689521 42689627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42690088 42690207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42690739 42690942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42691137 42691293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42691384 42691511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42691806 42691991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42692499 42692720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42693297 42693536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42695521 42695874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42696025 42696152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42697274 42697367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42697554 42697799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42697903 42697950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42698618 42698910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4155 nt):
ATGATGCATCTCCGGCTCTTCTGCATCCTGCTCGCCGCGGTCTCAGGAGCCGAGGGCTGGGGCTACTACG
GCTGCGACGAGGAGCTGGTGGGTCCCCTGTATGCACGCTCCCTGGGCGCCTCCTCCTACTACAGTCTCCT
TACTGCGCCGAGATTCGCCAGGCTGCACGGCATAAGCGGGTGGTCACCACGGATTGGGGATCCGAATCCC
TGGCTCCAGATAGACTTAATGAAGAAGCACCGGATCCGGGCCGTGGCCACACAGGGCTCCTTTAATTCTT
GGGACTGGGTCACACGTTACATGCTACTCTACGGCGACCGAGTGGACAGCTGGACACCGTTCTACCAGCG
AGGGCACAACTCGACCTTCTTTGGTAACGTGAACGAGTCGGCGGTGGTGCGCCATGACCTGCACTTCCAC
TTCACTGCGCGCTACATCCGCATCGTGCCCCTGGCCTGGAACCCACGCGGCAAGATCGGCCTGAGGCTCG
GCCTCTATGGCTGCCCATACAAGGCCGACATACTCTATTTCGACGGCGACGATGCCATCTCCTACCGCTT
CCCGCGAGGGGTCAGCCGAAGCCTGTGGGACGTGTTCGCCTTCAGCTTCAAGACCGAGGAGAAGGACGGT
CTTCTGCTGCACGCCGAGGGCGCCCAGGGCGACTACGTGACGCTCGAGCTGGAGGGGGCACACCTGCTGC
TGCACATGAGCCTGGGCAGCAGCCCTATCCAGCCAAGACCAGGTCACACCACCGTGAGCGCAGGCGGAGT
CCTCAATGACCAGCACTGGCACTATGTGCGGGTGGACCGATTTGGCCGCGATGTAAATTTCACCCTGGAC
GGCTATGTGCAGCGCTTTATTCTCAATGGAGACTTCGAGAGGCTGAACCTGGACACTGAGATGTTCATCG
GAGGTCTGGTGGGCGCCGCGCGGAAGAACCTGGCCTATCGGCATAACTTCCGCGGCTGCATAGAAAACGT
AATCTTCAACCGCGTCAACATCGCAGACCTGGCCGTGCGGCGCCATTCCCGGATCACCTTCGAGGGTAAG
GTGGCTTTTCGTTGCCTGGACCCGGTACCGCACCCTATCAACTTCGGAGGCCCTCACAACTTCGTTCAAG
TGCCCGGTTTCCCACGCCGTGGCCGCCTGGCAGTCTCATTTCGCTTCCGCACCTGGGACCTCACCGGGCT
TCTCCTTTTCTCCCGTCTGGGGGACGGGCTGGGCCACGTGGAGCTGACGCTCAGCGAAGGGCAGGTCAAC
GTGTCCATCGCGCAGAGCGGCCGAAAGAAGCTTCAGTTCGCTGCTGGGTACCGACTGAATGACGGCTTTT
GGCACGAGGTGAATTTTGTGGCACAGGAAAACCATGCAGTTATCAGCATTGATGATGTGGAAGGGGCAGA
GGTCAGGGTCTCATACCCGTTGCTGATCCGGACAGGGACCTCATATTTCTTTGGGGGTTGTCCCAAGCCA
GCCAGTCGATGGGACTGCCACTCCAACCAGACGGCATTCCATGGCTGCATGGAGCTGCTCAAGGTGGATG
GTCAACTGGTCAACCTGACTCTGGTGGAGGGCCGGCGGCTTGGATTCTATGCTGAGGTCCTCTTTGATAC
ATGTGGCATCACTGATAGGTGCAGCCCTAACATGTGTGAGCATGATGGACGCTGCTACCAGTCTTGGGAT
GACTTCATTTGCTACTGCGAACTGACGGGCTACAAGGGAGAGACCTGCCACACACCTTTGTATAAGGAAT
CCTGTGAGGCTTATCGGCTCAGTGGGAAAACTTCTGGAAACTTCACCATTGATCCTGATGGCAGTGGCCC
CCTGAAGCCATTTGTAGTGTACTGTGATATCCGAGAGAACCGAGCGTGGACAGTTGTGCGGCATGACAGG
CTGTGGACAACTCGAGTGACAGGTTCCAGCATGGAGCGGCCATTCCTGGGGGCTATCCAGTACTGGAATG
CATCCTGGGAGGAAGTCAGTGCCCTTGCCAATGCTTCCCAGCATTGTGAACAGTGGATCGAGTTCTCCTG
CTACAATTCCCGGCTGCTCAACACTGCAGGAGGCTACCCCTACAGCTTTTGGATTGGCCGAAATGAGGAG
CAGCACTTCTACTGGGGAGGCTCCCAGCCTGGGATCCAGCGCTGTGCCTGTGGTCTGGACCGGAGCTGTG
TGGACCCTGCCTTGTACTGCAACTGTGACGCTGACCAGCCCCAGTGGAGAACTGACAAGGGACTGCTGAC
CTTTGTGGACCATCTGCCTGTCACTCAGGTAGTGATAGGGGATACGAACCGCTCCACTTCTGAGGCCCAG
TTCTTCCTGAGGCCTCTGCGCTGCTATGGCGATCGAAATTCCTGGAACACCATTTCCTTCCACACCGGGG
CTGCACTACGCTTCCCCCCAATCCGTGCCAACCACAGCCTGGATGTCTCCTTCTACTTCAGGACCTCTGC
TCCCTCGGGGGTCTTCCTAGAGAATATGGGGGGCCCTTACTGCCAGTGGCGCCGACCTTATGTGCGGGTG
GAACTCAACACATCCCGGGATGTGGTCTTCGCCTTTGATGTGGGGAATGGGGATGAGAACCTCACAGTAC
ACTCAGACGACTTTGAGTTCAATGATGACGAGTGGCACCTGGTCCGGGCTGAAATCAACGTGAAGCAGGC
CCGGCTCCGAGTGGATCACCGGCCCTGGGTTCTGCGGCCTATGCCACTGCAGACCTACATCTGGATGGAG
TATGACCAGCCCCTCTATGTGGGATCTGCAGAGCTTAAGAGACGCCCCTTTGTGGGTTGCTTGAGGGCCA
TGCGTCTGAACGGAGTGACTCTGAACCTGGAGGGCCGTGCCAATGCCTCTGAGGGTACCTCACCCAACTG
CACAGGCCACTGTGCCCACCCTCGGCTCCCCTGTTTCCATGGAGGCCGCTGCGTGGAGCGCTATAGCTAC
TACACGTGTGACTGTGACCTCACGGCTTTTGATGGGCCATACTGCAACCACGATATTGGTGGTTTCTTTG
AGCCGGGCACCTGGATGCGCTATAACCTACAGTCAGCGCTGCGCTCTGCAGCCAGGGAGTTCTCCCACAT
GCTGAGCCGGCCAGTGCCAGGCTATGAGCCTGGCTACATCCCGGGCTATGATACTCCGGGCTATGTGCCT
GGCTACCATGGCCCCGGGTACCGCCTGCCCGACTACCCCCGGCCTGGTCGGCCTGTGCCCGGTTACCGTG
GGCCTGTCTACAACGTTACGGGAGAGGAGGTCTCCTTCAGCTTCAGCACCAGCTCCGCCCCTGCTGTCCT
GCTCTACGTCAGTTCCTTTGTTCGTGACTACATGGCTGTGCTCATCAAGGATGATGGGACCCTTCAGCTG
CGATATCAGCTGGGCACCAGTCCCTACGTGTACCAGCTAACCACTCGACCAGTGACCGATGGCCAGCCCC
ATAGCATCAATATCACCCGTGTTTACCGGAACCTCTTCATCCAGGTGGACTACTTCCCACTGACAGAGCA
GAAGTTCTCGCTGTTGGTGGACAGCCAGTTGGACTCACCCAAGGCCTTGTATTTAGGGCGTGTGATGGAG
ACAGGAGTCATTGACCCGGAGATCCAGCGCTACAACACCCCAGGTTTCTCAGGCTGCCTGTCTGGTGTTC
GATTCAACAACGTGGCTCCCCTCAAGACCCACTTCCGAACCCCTCGACCCATGACTGCTGAGCTAGCTGA
GGCCCTTCGAGTTCAGGGAGAACTGTCCGAATCTAATTGCGGAGCTATGCCACGTCTTGTTTCAGAGGTG
CCACCTGAGCTTGATCCCTGGTATCTGCCCCCAGACTTCCCCTACTACCATGATGAAGGATGGGTTGCCA
TACTTTTAGGCTTTTTGGTGGCCTTTCTGCTGCTGGGGCTGGTGGGAATGTTGGTGCTCTTCTATCTGCA
AAATCATCGCTATAAGGGCTCCTACCATACCAATGAGCCCAAGGCTGCCCACGAGTACCATCCTGGCAGC
AAACCTCCCCTACCCACTTCAGGCCCTGCCCAGGTCCCCACCCCTACAGCAGCTCCCAACCAAGCTCCAG
CCTCAGCCCCAGCCCCAGCCCCAACTCCAGCCCCAGCCCCTGGCCCCCGGGATCAGAACCTACCCCAGAT
CCTGGAGGAGTCCAGGTCTGAATGA

Translation (1384 aa):
MMHLRLFCILLAAVSGAEGWGYYGCDEELVGPLYARSLGASSYYSLLTAPRFARLHGISGWSPRIGDPNP
WLQIDLMKKHRIRAVATQGSFNSWDWVTRYMLLYGDRVDSWTPFYQRGHNSTFFGNVNESAVVRHDLHFH
FTARYIRIVPLAWNPRGKIGLRLGLYGCPYKADILYFDGDDAISYRFPRGVSRSLWDVFAFSFKTEEKDG
LLLHAEGAQGDYVTLELEGAHLLLHMSLGSSPIQPRPGHTTVSAGGVLNDQHWHYVRVDRFGRDVNFTLD
GYVQRFILNGDFERLNLDTEMFIGGLVGAARKNLAYRHNFRGCIENVIFNRVNIADLAVRRHSRITFEGK
VAFRCLDPVPHPINFGGPHNFVQVPGFPRRGRLAVSFRFRTWDLTGLLLFSRLGDGLGHVELTLSEGQVN
VSIAQSGRKKLQFAAGYRLNDGFWHEVNFVAQENHAVISIDDVEGAEVRVSYPLLIRTGTSYFFGGCPKP
ASRWDCHSNQTAFHGCMELLKVDGQLVNLTLVEGRRLGFYAEVLFDTCGITDRCSPNMCEHDGRCYQSWD
DFICYCELTGYKGETCHTPLYKESCEAYRLSGKTSGNFTIDPDGSGPLKPFVVYCDIRENRAWTVVRHDR
LWTTRVTGSSMERPFLGAIQYWNASWEEVSALANASQHCEQWIEFSCYNSRLLNTAGGYPYSFWIGRNEE
QHFYWGGSQPGIQRCACGLDRSCVDPALYCNCDADQPQWRTDKGLLTFVDHLPVTQVVIGDTNRSTSEAQ
FFLRPLRCYGDRNSWNTISFHTGAALRFPPIRANHSLDVSFYFRTSAPSGVFLENMGGPYCQWRRPYVRV
ELNTSRDVVFAFDVGNGDENLTVHSDDFEFNDDEWHLVRAEINVKQARLRVDHRPWVLRPMPLQTYIWME
YDQPLYVGSAELKRRPFVGCLRAMRLNGVTLNLEGRANASEGTSPNCTGHCAHPRLPCFHGGRCVERYSY
YTCDCDLTAFDGPYCNHDIGGFFEPGTWMRYNLQSALRSAAREFSHMLSRPVPGYEPGYIPGYDTPGYVP
GYHGPGYRLPDYPRPGRPVPGYRGPVYNVTGEEVSFSFSTSSAPAVLLYVSSFVRDYMAVLIKDDGTLQL
RYQLGTSPYVYQLTTRPVTDGQPHSINITRVYRNLFIQVDYFPLTEQKFSLLVDSQLDSPKALYLGRVME
TGVIDPEIQRYNTPGFSGCLSGVRFNNVAPLKTHFRTPRPMTAELAEALRVQGELSESNCGAMPRLVSEV
PPELDPWYLPPDFPYYHDEGWVAILLGFLVAFLLLGLVGMLVLFYLQNHRYKGSYHTNEPKAAHEYHPGS
KPPLPTSGPAQVPTPTAAPNQAPASAPAPAPTPAPAPGPRDQNLPQILEESRSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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