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Report for CCDS74342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74342.1 Public Homo sapiens 19 ALKBH6 24 110 108 CCDS HistoryNCBI Gene:84964Re-query CCDS DB by CCDS ID:74342.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 74342.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252984.11 ENSP00000252984.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000252984.11Link to Ensembl Protein Viewer:ENSP00000252984.6Re-query CCDS DB by Nucleotide ID:ENST00000252984Re-query CCDS DB by Protein ID:ENSP00000252984
Original member Current member EBI ENST00000378875.8 ENSP00000368152.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378875.8Link to Ensembl Protein Viewer:ENSP00000368152.4Re-query CCDS DB by Nucleotide ID:ENST00000378875Re-query CCDS DB by Protein ID:ENSP00000368152
Original member Current member NCBI NM_001297701.2 NP_001284630.1 Accepted alive Link to Nucleotide Sequence:NM_001297701.2Link to Protein Sequence:NP_001284630.1Re-query CCDS DB by Nucleotide ID:NM_001297701Re-query CCDS DB by Protein ID:NP_001284630Link to BLAST:NP_001284630.1
Original member Current member NCBI NM_001386055.1 NP_001372984.1 Accepted alive Link to Nucleotide Sequence:NM_001386055.1Link to Protein Sequence:NP_001372984.1Re-query CCDS DB by Nucleotide ID:NM_001386055Re-query CCDS DB by Protein ID:NP_001372984Link to BLAST:NP_001372984.1
Original member Current member NCBI NM_032878.5 NP_116267.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032878.5Link to Protein Sequence:NP_116267.4Re-query CCDS DB by Nucleotide ID:NM_032878Re-query CCDS DB by Protein ID:NP_116267Link to BLAST:NP_116267.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284630.1 238 Q3KRA9-1 238 100% 0 0
NP_001372984.1 238 Q3KRA9-1 238 100% 0 0
NP_116267.4 238 Q3KRA9-1 238 100% 0 0

Chromosomal Locations for CCDS 74342.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36009290 36009553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36010567 36010683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36010894 36011045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36011404 36011464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36013021 36013089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36013344 36013397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGAGGAGCAGGACGCCAGAGTCCCAGCCCTGGAACCGTTCAGAGTGGAGCAGGCACCACCTGTAATCT
ACTATGTCCCTGACTTCATCTCCAAAGAAGAGGAGGAGTATTTGCTTCGACAGGTTTTTAATGCCCCAAA
GCCAAAGTGGACCCAGCTCTCTGGGAGAAAGTTACAGAACTGGGGTGGGCTTCCTCATCCCCGAGGGATG
GTTCCTGAGCGGCTGCCCCCATGGCTCCAGCGCTACGTGGACAAAGTGTCAAACCTCAGCCTCTTTGGAG
GCCTCCCAGCTAACCATGTCCTCGTGAACCAGTATCTGCCTGGGGAGGGCATCATGCCCCACGAGGACGG
ACCACTGTACTACCCGACTGTCAGCACCATCAGCCTGGGCTCCCACACCGTGCTGGACTTCTACGAGCCG
CGGCGGCCAGAGGACGATGACCCTACAGAACAGCCTCGGCCTCCGCCCCGGCCCACCACCTCGCTACTGC
TGGAACCGCGCAGCCTGCTGGTGCTCCGCGGCCCCGCCTACACGCGTCTTCTCCACGGCATCGCCGCCGC
CCGCGTAGACGCGCTGGACGCCGCCTCCTCGCCGCCCAATGCGGCAGCCTGCCCGTCGGCGCGGCCGGGA
GCCTGCCTGGTGCGCGGCACCCGGGTCTCGCTGACCATCCGCCGCGTGCCCCGCGTGCTGCGCGCCGGCC
TCCTGCTGGGCAAGTGA

Translation (238 aa):
MEEQDARVPALEPFRVEQAPPVIYYVPDFISKEEEEYLLRQVFNAPKPKWTQLSGRKLQNWGGLPHPRGM
VPERLPPWLQRYVDKVSNLSLFGGLPANHVLVNQYLPGEGIMPHEDGPLYYPTVSTISLGSHTVLDFYEP
RRPEDDDPTEQPRPPPRPTTSLLLEPRSLLVLRGPAYTRLLHGIAAARVDALDAASSPPNAAACPSARPG
ACLVRGTRVSLTIRRVPRVLRAGLLLGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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