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Report for CCDS11252.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11252.2 Public Homo sapiens 17 CORO6 24 110 108 CCDS HistoryNCBI Gene:84940Re-query CCDS DB by CCDS ID:11252.2See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 11252.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000345068.9 ENSP00000344562.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000345068.9Link to Ensembl Protein Viewer:ENSP00000344562.5Re-query CCDS DB by Nucleotide ID:ENST00000345068Re-query CCDS DB by Protein ID:ENSP00000344562
Original member Current member EBI ENST00000388767.8 ENSP00000373419.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000388767.8Link to Ensembl Protein Viewer:ENSP00000373419.3Re-query CCDS DB by Nucleotide ID:ENST00000388767Re-query CCDS DB by Protein ID:ENSP00000373419
Original member Current member NCBI NM_001388431.1 NP_001375360.1 Accepted alive Link to Nucleotide Sequence:NM_001388431.1Link to Protein Sequence:NP_001375360.1Re-query CCDS DB by Nucleotide ID:NM_001388431Re-query CCDS DB by Protein ID:NP_001375360Link to BLAST:NP_001375360.1
Original member Current member NCBI NM_032854.4 NP_116243.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032854.4Link to Protein Sequence:NP_116243.2Re-query CCDS DB by Nucleotide ID:NM_032854Re-query CCDS DB by Protein ID:NP_116243Link to BLAST:NP_116243.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001375360.1 472 Q6QEF8-5 472 100% 0 0
NP_116243.2 472 Q6QEF8-5 472 100% 0 0

Chromosomal Locations for CCDS 11252.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29615732 29615857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29615945 29616175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29616279 29616336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29616702 29616847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29616938 29617042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29617500 29617619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29618790 29618971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29619060 29619189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29619651 29619773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29621224 29621421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGAGCAGACGTGTGGTTCGGCAAAGCAAGTTCCGCCATGTGTTTGGGCAGGCAGCAAAGGCCGACCAGG
CCTACGAGGACATCCGTGTGTCCAAGGTCACATGGGACAGCTCCTTCTGTGCCGTCAACCCCAAATTCCT
GGCCATTATTGTGGAGGCTGGAGGCGGGGGTGCCTTCATCGTCCTGCCTCTGGCCAAGACAGGGCGAGTG
GATAAGAACTACCCACTGGTCACTGGGCACACTGCCCCTGTGCTGGATATTGACTGGTGTCCACACAATG
ACAACGTTATCGCCAGTGCCTCAGACGACACCACCATCATGGTGTGGCAGATTCCAGACTATACCCCCAT
GCGCAACATTACGGAACCTATCATCACACTTGAGGGCCACTCCAAGCGTGTGGGCATCCTCTCCTGGCAC
CCTACTGCCAGGAATGTCCTGCTCAGTGCAGGTGGTGACAATGTGATCATCATCTGGAATGTGGGCACCG
GGGAGGTGCTGCTGAGCCTGGATGATATGCACCCAGACGTCATCCACAGTGTGTGCTGGAACAGCAACGG
TAGCCTGCTAGCCACCACCTGCAAGGACAAGACCTTGCGCATCATTGACCCCAGAAAAGGCCAAGTGGTG
GCGGAGAGGTTTGCGGCCCACGAGGGGATGAGGCCCATGCGGGCCGTCTTCACGCGCCAGGGCCATATCT
TCACCACGGGCTTCACCCGCATGAGCCAGCGAGAGCTGGGCCTGTGGGACCCGAACAACTTCGAGGAGCC
AGTGGCACTGCAGGAGATGGACACAAGCAACGGGGTCCTATTGCCCTTTTACGATCCCGACTCCAGCATC
GTCTACCTGTGTGGCAAGGGCGACAGCAGCATTCGGTACTTTGAGATTACCGACGAGCCGCCTTTCGTGC
ACTACCTGAACACGTTCAGCAGCAAAGAGCCGCAGCGGGGCATGGGTTTCATGCCCAAAAGGGGACTGGA
TGTCAGCAAGTGTGAGATCGCCCGGTTCTACAAGCTACACGAAAGAAAGTGTGAACCTATCATCATGACT
GTGCCCCGCAAGTCAGACCTCTTCCAGGACGATCTGTACCCGGATACGCCAGGCCCGGAGCCGGCCCTAG
AAGCGGACGAATGGCTATCCGGCCAGGACGCCGAACCCGTGCTCATTTCGCTGAGGGACGGCTATGTGCC
CCCCAAGCACCGCGAGCTCCGGGTCACGAAGCGCAACATCCTGGACGTGCGCCCGCCCTCCGGCCCCCGC
CGCAGCCAGTCGGCCAGCGACGCCCCCTTGTCGCAGCAGCACACCCTGGAGACGCTGCTGGAAGAGATCA
AGGCCCTCCGCGAGCGGGTGCAGGCCCAGGAGCAGCGCATCACGGCTCTGGAGAACATGCTGTGCGAGCT
GGTGGACGGCACGGACTAG

Translation (472 aa):
MSRRVVRQSKFRHVFGQAAKADQAYEDIRVSKVTWDSSFCAVNPKFLAIIVEAGGGGAFIVLPLAKTGRV
DKNYPLVTGHTAPVLDIDWCPHNDNVIASASDDTTIMVWQIPDYTPMRNITEPIITLEGHSKRVGILSWH
PTARNVLLSAGGDNVIIIWNVGTGEVLLSLDDMHPDVIHSVCWNSNGSLLATTCKDKTLRIIDPRKGQVV
AERFAAHEGMRPMRAVFTRQGHIFTTGFTRMSQRELGLWDPNNFEEPVALQEMDTSNGVLLPFYDPDSSI
VYLCGKGDSSIRYFEITDEPPFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERKCEPIIMT
VPRKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLRDGYVPPKHRELRVTKRNILDVRPPSGPR
RSQSASDAPLSQQHTLETLLEEIKALRERVQAQEQRITALENMLCELVDGTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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